CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  RR +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CALFG (50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRKL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_AMBTC (50S ribosomal protein L14, chloroplastic OS=Amborella trichopoda GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G          A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++P+G  KG+ + G I  E   L
Sbjct:    8 LNVADNSGARELMCIRIVGASNPRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGIIIRYDDNAAVVIDPEGNPKGTRVFGSIAGELRHL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ACOCL (50S ribosomal protein L14, chloroplastic OS=Acorus calamus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMSLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRHL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STRSV (50S ribosomal protein L14 OS=Streptococcus sanguinis (strain SK36) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STRGC (50S ribosomal protein L14 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ +  I V G  GR      A +GD+++A+VK+  P    K   V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILTIKVLGGSGR----KFANIGDVIVASVKQATPGGAVKKGDVVKAVIVRTKSGARRKDGSYIKFDENAAVIIREDKTPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCA5 (50S ribosomal protein L14 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  236 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 538
            N ADN+GAK + II  K + G + R  S  +GD+V+ TVKK  P       +V+ AVIVR ++   R++G  + F+DNA V++   G ++G+ + GP+ +E  D
Sbjct:    9 NVADNSGAKEVMII--KNLGGSIVR--STNIGDVVVVTVKKAIPHGFVKEGQVLKAVIVRTKRGLMRENGSHIRFDDNAVVLIKEDGTLRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACCB (50S ribosomal protein L14 OS=Lactobacillus casei (strain BL23) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ + +I V G   R     +  +GD+V+ATVK+  P     +  V+ AVIVR +   RR DG ++ F++NA VI+N     +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILVIKVLGGSYR----KTGNIGDVVVATVKQATPGGVVKKADVVKAVIVRTKSGARRADGSYIKFDENAAVIINADKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACC3 (50S ribosomal protein L14 OS=Lactobacillus casei (strain ATCC 334) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ + +I V G   R     +  +GD+V+ATVK+  P     +  V+ AVIVR +   RR DG ++ F++NA VI+N     +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREILVIKVLGGSYR----KTGNIGDVVVATVKQATPGGVVKKADVVKAVIVRTKSGARRADGSYIKFDENAAVIINADKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEOUR (50S ribosomal protein L14 OS=Geobacter uraniireducens (strain Rf4) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            ++ ADN+GAK L+ I V G   R      A +GD+++A+VK+  P+ + K   V+ AV+VR  K   R DG ++ F+ N+GV++N + E  G+ I GP+ +E
Sbjct:    8 LDVADNSGAKKLFCIKVLGGSKR----KYAGIGDIIVASVKEAIPNSKVKKGDVVKAVVVRTAKEIGRPDGSYIRFDGNSGVVINNQKEPVGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_CITSI6.573e-1135.8550S ribosomal protein L14, chloroplastic OS=Citrus... [more]
RK14_CALFG6.573e-1134.9150S ribosomal protein L14, chloroplastic OS=Calyca... [more]
RK14_AMBTC6.573e-1134.9150S ribosomal protein L14, chloroplastic OS=Ambore... [more]
RK14_ACOCL6.573e-1134.9150S ribosomal protein L14, chloroplastic OS=Acorus... [more]
RL14_STRSV8.585e-1139.2250S ribosomal protein L14 OS=Streptococcus sanguin... [more]
RL14_STRGC8.585e-1139.2250S ribosomal protein L14 OS=Streptococcus gordoni... [more]
RL14_MYCA58.585e-1138.4650S ribosomal protein L14 OS=Mycoplasma arthritidi... [more]
RL14_LACCB8.585e-1138.2450S ribosomal protein L14 OS=Lactobacillus casei (... [more]
RL14_LACC38.585e-1138.2450S ribosomal protein L14 OS=Lactobacillus casei (... [more]
RL14_GEOUR8.585e-1138.2450S ribosomal protein L14 OS=Geobacter uraniireduc... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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