CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = -2
Query:   60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527
            + + NL  S   + L + F     I   K+  +  G+ KG+ F++F + E A+ A++  N M I       G  +R + + + +       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  489 LVLSNLSYSATKETLEEVFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE------GRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 633          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 39/155 (25.16%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L  +   + L     P+G I+S K   D +  + KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD  G S+  GF   E+ +     +   NGK
Sbjct:   63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = -2
Query:   63 SIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 554
            S  +   G +F+  L      K L D F+ FG ++ C I  D  +G+S+GFGF+ F++  S +  +D    +L+G +I+ K+                 K     +FV  L+ ES T+E +++ FGE+G I +  +  D    K + F F+ F+  +   K ++    KKF
Sbjct:   62 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE----KKF 216          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 39/158 (24.68%), Postives = 80/158 (50.63%), Query Frame = -2
Query:   75 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK-----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALN 527
            +++ ++   +    +   F+PFG I S  ++ D   Q  KGF FV++E  E AQ A++++NG L+  + + VG      + + V  + +     FN ++V ++    ++ED+K +F  +G I    + +       K +GF+ + N     +A+ ++N
Sbjct:  132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/155 (25.16%), Postives = 74/155 (47.74%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L      + L     P+G I+S K   D +  + KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD  G S+  GF   E+ +     +   NGK
Sbjct:   63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM41_DANRE (RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 43/158 (27.22%), Postives = 72/158 (45.57%), Query Frame = -2
Query:   54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527
            IF+ NL  +   + +   FS +G I  C I        K FGFV  ++K  A  AI  L+  ++N   + V     K +  T         + V N+  S T+++L+  F EYG +    +++D       + FV+ E V+DA +A+  L+   F  +
Sbjct:    4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV-------KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPKTST--------KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD-------YAFVHMERVEDAMEAISGLDNTAFQGK 139          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = -2
Query:   57 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDD 527
            +FI  L+       L + F  +G +   KI  D  +G+S+GFGF+ FE   S    +     L+G +I+ K+      + + E++      K   +FV  +      ++ ++ F ++GTI  A +M D D G+S+ FGFV +    D+A AVD +   KF D
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA-----IPRDEQD------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY----DSADAVDRVCQNKFID 307          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
NUCL_MOUSE3.854e-1129.49Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]
RBMS1_BOVIN5.033e-1125.16RNA-binding motif, single-stranded-interacting pro... [more]
ROAA_HUMAN6.573e-1128.07Heterogeneous nuclear ribonucleoprotein A/B OS=Hom... [more]
PUF68_DROME6.573e-1124.68Poly(U)-binding-splicing factor half pint OS=Droso... [more]
RBMS1_HUMAN8.585e-1125.16RNA-binding motif, single-stranded-interacting pro... [more]
RBM41_DANRE8.585e-1127.22RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 P... [more]
HRP1_YEAST8.585e-1129.63Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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