CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11 Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = -2 Query: 60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527 + + NL S + L + F I K+ + G+ KG+ F++F + E A+ A++ N M I G +R + + + + +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 489 LVLSNLSYSATKETLEEVFEKATFI---KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE------GRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 633
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11 Identity = 39/155 (25.16%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + + L P+G I+S K D + + KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD G S+ GF E+ + + NGK Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11 Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = -2 Query: 63 SIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 554 S + G +F+ L K L D F+ FG ++ C I D +G+S+GFGF+ F++ S + +D +L+G +I+ K+ K +FV L+ ES T+E +++ FGE+G I + + D K + F F+ F+ + K ++ KKF Sbjct: 62 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE----KKF 216
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11 Identity = 39/158 (24.68%), Postives = 80/158 (50.63%), Query Frame = -2 Query: 75 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK-----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALN 527 +++ ++ + + F+PFG I S ++ D Q KGF FV++E E AQ A++++NG L+ + + VG + + V + + FN ++V ++ ++ED+K +F +G I + + K +GF+ + N +A+ ++N Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11 Identity = 39/155 (25.16%), Postives = 74/155 (47.74%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + L P+G I+S K D + + KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD G S+ GF E+ + + NGK Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM41_DANRE (RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11 Identity = 43/158 (27.22%), Postives = 72/158 (45.57%), Query Frame = -2 Query: 54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527 IF+ NL + + + FS +G I C I K FGFV ++K A AI L+ ++N + V K + T + V N+ S T+++L+ F EYG + +++D + FV+ E V+DA +A+ L+ F + Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV-------KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPKTST--------KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD-------YAFVHMERVEDAMEAISGLDNTAFQGK 139
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11 Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = -2 Query: 57 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDD 527 +FI L+ L + F +G + KI D +G+S+GFGF+ FE S + L+G +I+ K+ + + E++ K +FV + ++ ++ F ++GTI A +M D D G+S+ FGFV + D+A AVD + KF D Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA-----IPRDEQD------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY----DSADAVDRVCQNKFID 307 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |