CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.549e-55
Identity = 108/196 (55.10%), Postives = 142/196 (72.45%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S FGNILSC +  D +G SKG+GFV FE  E+A+ AI K+NGML+N ++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++ YVG+A
Sbjct:   72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266          

HSP 2 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 80/178 (44.94%), Postives = 110/178 (61.80%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT------------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T   +T            +  N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368          

HSP 3 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 55/176 (31.25%), Postives = 97/176 (55.11%), Query Frame = -2
Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560
            +PS     T ++++ +L   +    L++ FSP G ILS +I  D  +  S  + +V F++ + A++A+D +N  +I  K V +       +R+    K+   N+FVKNLD+S  ++ L      +G I S  V+ D +G SK +GFV+FE  + A +A+  +NG   + R+ +VG+
Sbjct:    2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQ 172          

HSP 4 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N+++KNLD  ID + L   FSPFG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 214.542 bits (545), Expect = 3.329e-55
Identity = 104/196 (53.06%), Postives = 147/196 (75.00%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+TP+  +  RIM+S RDPS+RK G+GNIFIKNL   ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V   L ++ER++   +TK  + N++VKN++  TTDE  +++F ++G I SA + +D DGK K FGFVN+E  +DA KAV+ALN  + +  + YVG+A
Sbjct:   99 LNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294          

HSP 2 Score: 122.094 bits (305), Expect = 2.249e-27
Identity = 77/212 (36.32%), Postives = 112/212 (52.83%), Query Frame = -2
Query:   33 LNFTPLNNKSI----RIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN   LN + I     +    RD  +   K+   N+++KN++     +   + F+ FG I+S  +  D  G+ KGFGFV +E  E A  A++ LN   +N ++++VG   +K ER  V  K           K+   N+FVKNLD+S  DE L++ F  YGTITSA VMR  +GKSK FGFV F   ++A KA+   N +    +  YV  A
Sbjct:  186 LNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397          

HSP 3 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 53/169 (31.36%), Postives = 93/169 (55.03%), Query Frame = -2
Query:   42 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 545
            ++ + ++++ +L+ S+    L+D FSP G++ S ++  D  +  S G+ +V F + E+ + AI++LN   I  +   +       +R+    K    N+F+KNL     ++ L   F  +G I S+ +  D +GKSK FGFV+FE    A +A+DALNG   + +E YV
Sbjct:   34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198          

HSP 4 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+F+KNLD S+D + L + F+P+G I S K+    +G+SKGFGFV F   E A  AI + N  ++  K ++V    RK  R +
Sbjct:  323 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 405          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.348e-55
Identity = 101/197 (51.27%), Postives = 148/197 (75.13%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  +  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D +G SKG+GFV +E  E+A  AI  +NGML+N+K+V+VGH + K++R++    +K  F N++VKN++   TD++ + +F +YG +TS+ + RD + GKS+ FGFVNF + +DA+KAV  LN K+F  +  YVG+A
Sbjct:  122 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318          

HSP 2 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 72/231 (31.17%), Postives = 107/231 (46.32%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-----------------------------GD------------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN++  +        F  +G++ S  +A D  +G+S+GFGFV F + E A  A+ +LN    + + ++VG   +K ERE              A K +  N+++KNLD+   DE L+++F E+G ITSA VMRD                             GD                  GKSK FGFV F N DDA KAV  +N +  +++  YV  A
Sbjct:  238 KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALA 468          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.348e-55
Identity = 104/196 (53.06%), Postives = 145/196 (73.98%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++ +  +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTF+ FG ILSCK+ATD  G SK FGFV +E  E+A+ AI+ +NGML+ND++V+VG  + K++RE+    +K  F NV+ KN+D   ++E+ KK+F  YG ITS  + +D +GKSK FGFVNFEN + A KAVD LN K+ + ++ YVG+A
Sbjct:  112 LNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRA 307          

HSP 2 Score: 122.865 bits (307), Expect = 1.318e-27
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N++ KN+D     +     F  +G I S  +  D  G+SKGFGFV FEN ESA  A+D+LN   IN ++++VG   +K+ER     K   N            N+F+KNLD++   E L++ F  +G+ITSA VM D  GKSK FGFV F + ++A KA+  +N +    +  YV  A
Sbjct:  228 KANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALA 410          

HSP 3 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+FIKNLD +ID + L + F PFG+I S ++  D +G+SKGFGFV F + E A  AI ++N  +I  K ++V    RK  R +
Sbjct:  336 NLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRS 418          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.687e-55
Identity = 103/196 (52.55%), Postives = 148/196 (75.51%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++ + N+  RIM+S RDP++R++G GNIFIKNLD  ID+KALHDTF+ FGNILSCK+AT+ +G S G+GFV +E  E+A+ AI  +NGML+NDK+V+VGH + ++ER+    +T+  F NV+ KN+D   TD++ +K+F ++G ITS V+ RD DGKSK FGFVNFE+ ++A KAVD L+   F  ++ +V +A
Sbjct:  108 LNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARA 302          

HSP 2 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 67/178 (37.64%), Postives = 98/178 (55.06%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT----------KFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++ KN+D  +        F+ FG I SC +  D  G+SKGFGFV FE+   AQ A+D+L+      +++FV    +K ERE    ++          KF   N+++KN+ ES  DE L++ F  +G ITS  +MR   G S+ FGFV +   ++A KAV  +NGK  D+R  YV  A
Sbjct:  228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALA 405          

HSP 3 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  288 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 530
            N+++KN+ +S D + L + F+PFG I SCKI    SG S+GFGFV +   E A  A+ ++NG +++++ ++V    RK  R
Sbjct:  331 NLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVR 411          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.158e-54
Identity = 104/196 (53.06%), Postives = 141/196 (71.94%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LNFTP+  K  RIM+S RDPS+RK G GNIFIKNL   ID+KAL+DTFS FGNILS K+ATD +G+SKGFG+V FE  ESA  AID LNGML+N ++++VG  L K+ERE+    +K  F NV++KN++  TTD++ +++  ++G   S V+ R  +G++K FGFVNF N +DA K V+ LN  +F  +  YV +A
Sbjct:   96 LNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRA 291          

HSP 2 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 63/183 (34.43%), Postives = 94/183 (51.37%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N++IKN++     K   +  + FG   S  +     G++KGFGFV F N E A   +++LN      + ++V    +K ER+    K           K+   N+F+KNLD+S  D+ L++ F  YGTITSA VM   +GKSK FGFV F   ++A KA+   N +    +  YV  A
Sbjct:  212 KANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394          

HSP 3 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = -2
Query:   39 TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVG 536
            + ++++ +LD S+    L+D FSP G + S ++  D  +  S G+ +V F + ++A+ AI+KLN   I  K   +       +R+    K    N+F+KNL     ++ L   F  +G I S+ V  D  GKSK FG+V+FE  + A++A+DALNG   + +E YVG
Sbjct:   34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRI----MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVG 196          

HSP 4 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+FIKNLD SID K L + F+P+G I S K+ T  +G+SKGFGFV F   E A  AI + N  ++  K ++V    RK  R +
Sbjct:  320 NLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 402          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.200e-54
Identity = 100/196 (51.02%), Postives = 143/196 (72.96%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+  +N +  RIM+S RDP+IRK G+GNIFIKNL  +ID+KALH+TFS FG +LSCK+A D +G S+GFGFV F+ +  A++AI+ +NGML+N  +V+V   + K++R  +    K  F N++VKN+D  TTDE+ +++F +YG I SA + +D +GK K FGFVNF + + AAKAV+ LNGK+F  +  YVG+A
Sbjct:  111 LNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306          

HSP 2 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 71/183 (38.80%), Postives = 100/183 (54.64%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+D     +     FS +G I+S  +  D  G+ KGFGFV F +  +A  A+++LNG     + ++VG   +K ER     K           KF   N+F+KNLD+S  DE LK+ F  YGTITSA VMRD +G SK FGFV F + ++A KA+   N +    +  YV  A
Sbjct:  227 KANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409          

HSP 3 Score: 90.8929 bits (224), Expect = 5.552e-18
Identity = 52/169 (30.77%), Postives = 89/169 (52.66%), Query Frame = -2
Query:   42 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 545
            ++   ++++  LD +I    L+D FSP G I S ++  D  +  S G+ +V + + E+ + AI +LN   IN +   +       ER+    K    N+F+KNL  +  ++ L + F  +G + S  V  D +G S+ FGFV+F+   DA  A++A+NG   +  E YV
Sbjct:   46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRI----MWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYV 210          

HSP 4 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+FIKNLD SID + L + F+P+G I S ++  D  G SKGFGFV F + E A  A+ + N  ++  K ++V    RK  R +
Sbjct:  335 NLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRS 417          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.399e-53
Identity = 104/196 (53.06%), Postives = 140/196 (71.43%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS FGNILSCK+  D  G S+G+GFV FE +E+A  AI  +NGML+ND++VFVGHF  ++ERE    A   +F NV++KN  E   D+ L++IF  +G   S  VM D  G+S+ FGFVN+ N ++A KAV  +NGK+ + R  YVG+A
Sbjct:   72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266          

HSP 2 Score: 138.272 bits (347), Expect = 3.032e-32
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D K L + FS FGN LS K+  D +G+S+GFGFV + N E AQ A+ ++NG  +N + ++VG   ++ ER+   +K KF              N++VKNLD+   D+ L+K F  YGTITSA VM +G G SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368          

HSP 3 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  279 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 530
            N+++KNLD  ID   L   FSP+G I S K+ T+G G SKGFGFV F + E A  A+ ++NG +++ K ++V    RK+ER+ +
Sbjct:  295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.827e-53
Identity = 104/196 (53.06%), Postives = 139/196 (70.92%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS FGNILSCK+  D  G S+G+GFV FE  E+A  AI  +NGML+ND++VFVGHF  ++ERE    A   +F NV++KN  E   D+ L++IF  +G   S  VM D  G+S+ FGFVN+ N ++A KAV  +NGK+ + R  YVG+A
Sbjct:   72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266          

HSP 2 Score: 139.043 bits (349), Expect = 1.778e-32
Identity = 76/179 (42.46%), Postives = 109/179 (60.89%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D K L + FS FGN LS K+  D SG+S+GFGFV + N E AQ A+ ++NG  +N + ++VG   ++ ER++  +K KF              N++VKNLD+   D+ L+K F  YGTITSA VM +G G SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368          

HSP 3 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = -2
Query:  279 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 530
            N+++KNLD  ID   L   F P+G I S K+ T+G G SKGFGFV F + E A  A+ ++NG +++ K ++V    RK+ER+ +
Sbjct:  295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.070e-53
Identity = 104/196 (53.06%), Postives = 139/196 (70.92%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS FG+ILSCK+  D  G S+G+GFV FE +E+A  AI  +NGML+ND++VFVGHF  ++ERE    A   +F NV++KN  E   D+ LK+IF  +G   S  VM D  G+S+ FGFVN+ N ++A KAV  +NGK+ + R  YVG+A
Sbjct:   72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266          

HSP 2 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D K L + FS FGN LS K+  D SG+S+GFGFV + N E AQ A+ ++NG  +N + V+VG   ++ ER+   +K KF              N++VKNLD+   D+ L+K F  YGTITS  VM +G G SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368          

HSP 3 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  279 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 530
            N+++KNLD  ID   L   FSP+G I S K+ T+G G SKGFGFV F + E A  A+ ++NG +++ K ++V    RK+ER+ +
Sbjct:  295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PABP3_HUMAN2.549e-5555.10Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP_YEAST3.329e-5553.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR4.348e-5551.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA4.348e-5553.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA9.687e-5552.55Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA2.158e-5453.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_KLULA8.200e-5451.02Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR1.399e-5353.06Embryonic polyadenylate-binding protein OS=Xenopus... [more]
EPABA_XENLA1.827e-5353.06Embryonic polyadenylate-binding protein A OS=Xenop... [more]
EPABB_XENLA4.070e-5353.06Embryonic polyadenylate-binding protein B OS=Xenop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
back to top