CB304894 | Citrus Genome Database

Overview


Name	CB304894
Unique Name	CB304894
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	618

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1621	contig	Csv1_Contig1621:592..1209.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 4.500e-52
Identity = 101/196 (51.53%), Postives = 141/196 (71.94%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++ ++ +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTFS FG ILSCK+ATD  GQSK FGFV +E  E+A+ AI+ +NGML+ND++VFVG  + K++RE+    +K  F NV+VKNL     +   ++IF  +G +TS  +  D +GKS+ FGFVNFEN + A  AV  +N K+ D ++ YVG+A
Sbjct:  119 LNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRA 314

HSP 2 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 73/183 (39.89%), Postives = 111/183 (60.66%), Query Frame = -2

Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIK--TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N+++KNL   +D+    + F PFG + S  + TD  G+S+GFGFV FEN ESA NA+ ++N   I+ ++++VG   +K+ER        E+  ++  +K+   N+FVKNLD+S   E L++ F  +GTITSA VM D  GKSK FGFV F + ++A KA+  +N +    +  YV  A
Sbjct:  235 KANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALA 417

HSP 3 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = -2

Query:  282 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 581
            R+  S R   + K    N+F+KNLD SID + L + F PFG I S ++  D +G+SKGFGFV F + E A  AI ++N  +I  K ++V    RK  R +
Sbjct:  326 RLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRS 425

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.500e-52
Identity = 98/196 (50.00%), Postives = 141/196 (71.94%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++ +  +S RIM+S RDP++RK+G GNIFIKNLD+SID+KALHDTF+ FG+ILSCK+ TD +G+S+GF FV +   E+A  AI  +NGML+NDK+V+VGH + K+ER  +   ++ +F NV++KN+D   TD + + +   +G   S  + RD  G SK FGFVN+EN + A KAVD LN K+ + ++ Y G+A
Sbjct:  107 LNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRA 302

HSP 2 Score: 131.339 bits (329), Expect = 3.707e-30
Identity = 71/178 (39.89%), Postives = 100/178 (56.18%), Query Frame = -2

Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN+D  +      D   PFG  +S  ++ D  G SKGFGFV +EN ESA+ A+D+LN   +N K+++ G    K ERE    K+               N++VKNLD+   D+ L+  F  +GTITS+ VMRD  G S+ FGFV + + D+A KAV  +NGK    +  YV  A
Sbjct:  228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALA 405

HSP 3 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = -2

Query:  288 NNKSIRIMYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 596
            + +   +  SH +  +    KS   N+++KNLD   D   L   F  FG I S K+  D SG S+GFGFV + + + A  A+ ++NG +I  K ++V    RK  R
Sbjct:  306 SEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.943e-49
Identity = 94/196 (47.96%), Postives = 136/196 (69.39%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++P+  +  RIM+S RDP++RK+G GNI+IKNLD +ID+KALHDTFS FG ILSCKIATD  G S+GFGFV +E+ ESA++AI  +NGML+NDK+VFVG  + K +R       K  F NVF+KNL    T+ + +++  ++G  +S  +  + +GK   FGFV+++  D A KA+D L+  +F   + + G+A
Sbjct:  107 LNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRA 302

HSP 2 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 63/181 (34.81%), Postives = 94/181 (51.93%), Query Frame = -2

Query:   42 RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 548
            +K+   N+FIKNL   I      +  + FG   S  ++T+  G+  GFGFV ++  + A  AID L+       ++F G   +K ER     K        K N     N+++KNLD++  D+ L+  F  +GTITSA VM D  GKSK FGFV + + ++A KAV  +N +    +  YV
Sbjct:  222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYV 402

HSP 3 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = -2

Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N++IKNLD +ID   L   F+P G I S K+  D +G+SKGFGFV + + E A  A+ ++N  L+  K ++V    RK  R +
Sbjct:  331 NLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRS 413

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 117.087 bits (292), Expect = 7.234e-26
Identity = 67/175 (38.29%), Postives = 103/175 (58.86%), Query Frame = -2

Query:   42 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+    +  +V
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 98/198 (49.49%), Postives = 132/198 (66.67%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +  YVG+A
Sbjct:   79 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274

HSP 2 Score: 116.701 bits (291), Expect = 9.448e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 49/165 (29.70%), Postives = 89/165 (53.94%), Query Frame = -2

Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 527
            +++ +LD  +    L+  F P G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+ YVG+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKP----FRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGR 179

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 91/196 (46.43%), Postives = 133/196 (67.86%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  KSIR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++NG L+   +VFVG F  +++RE    +  ++F NV++KN      DE LK +F +YG   S  VM D  GKSK FGFV+F++ + A KAV+ +NG+  + +  +VG+A
Sbjct:   71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRA 265

HSP 2 Score: 123.635 bits (309), Expect = 7.729e-28
Identity = 64/167 (38.32%), Postives = 103/167 (61.68%), Query Frame = -2

Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++NG  IN + +FVG   +K ER+   +K  F               +++KNLD++  DE L+  F  +G+I+   VM++ +G+SK FG + F + +DA KA+  +NG+
Sbjct:  191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ-AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGR 355

The following BLAST results are available for this feature:

BLAST of CB304894 vs. ExPASy Swiss-Prot

BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157


Match Name	E-value	Identity	Description
PABP_PICGU	4.500e-52	51.53	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_CRYNE	4.500e-52	50.00	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_YARLI	7.943e-49	47.96	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP5_PONPY	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	8.219e-46	49.49	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]
PAB4L_HUMAN	6.958e-45	46.43	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA