CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  + L   F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  + L   F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  + L   F   G I SCK+  D    GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 46/157 (29.30%), Postives = 86/157 (54.78%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 46/157 (29.30%), Postives = 86/157 (54.78%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 46/157 (29.30%), Postives = 86/157 (54.78%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 49/160 (30.63%), Postives = 85/160 (53.12%), Query Frame = -2
Query:   75 RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 548
            ++S   N+ +  L + +  + L+  F   G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans GN=mrd1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = -2
Query:   78 TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 536
            T  +FIKNL+ S  +++L + F P    +S +I T       G   S GFGF  F+ K  AQ A+  +NG  ++   + V            R++E     I  +   + +KNL    T +D++ +FG YG + S  V +  D  ++ FGF +F +  +A  A+DAL
Sbjct:  591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 757          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_ASPFU (Multiple RNA-binding domain-containing protein 1 OS=Aspergillus fumigatus GN=mrd1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 54/193 (27.98%), Postives = 90/193 (46.63%), Query Frame = -2
Query:   78 LNNKSIRIMYSHRDPSIRKSG-----TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 599
            L  K++   +S  D    + G     T  +F+KNL+ S  ++   + F P    +S +I T       G   S GFGFV F  K  AQ A+  ++G  ++  ++ V            R++E     I  +   + +KNL    T +D++ +FG YG + S  V +  D  ++ FGF +F +  +A  A+DAL
Sbjct:  570 LETKAVSQGFSTADTFAAEDGDEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 762          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = -2
Query:   75 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 530
            N+ +  L + +  + L+  F   G I +C+I  D  +G S G+ FV F  +  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG I    ++RD   GK +   FV F   ++A +A+ ALN
Sbjct:  111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ELAV2_MOUSE1.158e-1529.94ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.158e-1529.94ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_XENLA1.512e-1529.75ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV4_RAT1.975e-1529.30ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE1.975e-1529.30ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN1.975e-1529.30ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
SXL_DROSU3.368e-1530.63Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
MRD1_EMENI3.368e-1530.54Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_ASPFU3.368e-1527.98Multiple RNA-binding domain-containing protein 1 O... [more]
SXL_CERCA4.399e-1532.47Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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