CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 45/161 (27.95%), Postives = 79/161 (49.07%), Query Frame = -2
Query:   60 SGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 542
            +GT  +FI NLD+      L   F  +G ++ C +        K +GFV  E ++  ++AI  LNG  +N+  + V     +  +   A  T    +FV NL + T   +++++F +YGT+    ++R+       +GFV+ + V D   A+  LNG+  D
Sbjct:    4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV-----EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELNGRVVD 145          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 46/176 (26.14%), Postives = 91/176 (51.70%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH---------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG           + +   E  A    +N ++V ++    +D+D+K +F  +G I S ++ R+   GK K FGF+ +E    +  AV ++N      +   VGKA
Sbjct:   88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARA----YNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 52/191 (27.23%), Postives = 91/191 (47.64%), Query Frame = -2
Query:   54 NNKSIRIMYSHRDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 596
            N++         DPS+         R++    +++ NLDK+I    L   F   G I + KI  D + ++  + FV++     A  A+  LNG  I +  V +    + Q+  +        N+FV +L+ +  DE L+  F ++ +  S  VM D   G S+ +GFV+F + DDA  A+D++ G+  + R
Sbjct:   45 NSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  111 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 533
            G +FI  L+      +L D F  FG +L C +  D  +G+S+GFGF+ F+N +     + K   L+G +I+ K+      + ++E+E  A       +FV  +    T+E+ +  F ++G +  A +M D D G+ + FGFV +EN
Sbjct:  163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRA-----IPREEQEKTA------KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = -2
Query:   54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENVDDAAKAVDALNGKKFDDR 527
            IF+  L  SID + L   F   G ++  ++  + G+ +S+G+G+V FENK  A+ AI ++ G  I+ + +       K        K KF +        +F+ NL  +   + + ++F ++G + S  +    + +  K FG+V F N++DA KA+DAL G+  D+R
Sbjct:  170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK-KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +                  N V+V NL      + L+ +F E G +  A V+ D D G+S+ FGFV + + ++   A+++L+G   + R   V  A
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 53/173 (30.64%), Postives = 85/173 (49.13%), Query Frame = -2
Query:   72 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 560
            D  +    T +IFIKNL+ S  ++ L D F  F   +  ++ T       G   S GFGFV+F  KE A   I  ++G +I+  ++ +     +Q  ++   KTK N     + VKNL    T +D+ ++F  +G + S  V +  D  ++ F FV F    +A  A+D L+G
Sbjct:  654 DEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL-KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHG 825          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 43/160 (26.88%), Postives = 85/160 (53.12%), Query Frame = -2
Query:   72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKG------FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530
            ++F+KNL+     + L D F      L  ++      ++KG      FGFV+F +KE+A+ A   ++G +++  ++ +    R Q+ ET   K   ++ + +KNL    T +D++K+FG +G++ +  V +  + +S+ F F  + +  +A  A+ AL G
Sbjct:  606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13
Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = -2
Query:   72 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQ---ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 581
            R + S  +  + ++ + +IF+ NL      + L + FS  G ++   I T   G  +G G V+F N +    AI + +G    D+++FV        + ++++   +R  +    K + V VKNL  S   + LK IF E G +  A V  DGDG S   G V+F ++ D  +A++  NG
Sbjct:  145 RELDSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITS-RGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 323          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ELAV3_XENLA2.183e-1428.03ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
LARK_DROME3.724e-1427.95RNA-binding protein lark OS=Drosophila melanogaste... [more]
PU60B_DANRE6.352e-1426.14Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
PUB1_YEAST8.296e-1427.23Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
YHKF_SCHPO1.084e-1330.82Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
NSR1_YEAST1.084e-1329.17Nuclear localization sequence-binding protein OS=S... [more]
ROC1_NICPL1.415e-1328.5730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
MRD1_YEAST1.415e-1330.64Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_YARLI1.415e-1326.88Multiple RNA-binding domain-containing protein 1 O... [more]
HRB1_YEAST1.415e-1328.89Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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