CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14 Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + F G I SCK+ D +GQS G+GFV + + A AI+ LNG+ + K + V + + + N++V +L ++ ++++++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14 Identity = 45/161 (27.95%), Postives = 79/161 (49.07%), Query Frame = -2 Query: 60 SGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 542 +GT +FI NLD+ L F +G ++ C + K +GFV E ++ ++AI LNG +N+ + V + + A T +FV NL + T +++++F +YGT+ ++R+ +GFV+ + V D A+ LNG+ D Sbjct: 4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV-----EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELNGRVVD 145
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 46/176 (26.14%), Postives = 91/176 (51.70%), Query Frame = -2 Query: 33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH---------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527 +++ ++ + + F+PFG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + E A +N ++V ++ +D+D+K +F +G I S ++ R+ GK K FGF+ +E + AV ++N + VGKA Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARA----YNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14 Identity = 52/191 (27.23%), Postives = 91/191 (47.64%), Query Frame = -2 Query: 54 NNKSIRIMYSHRDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 596 N++ DPS+ R++ +++ NLDK+I L F G I + KI D + ++ + FV++ A A+ LNG I + V + + Q+ + N+FV +L+ + DE L+ F ++ + S VM D G S+ +GFV+F + DDA A+D++ G+ + R Sbjct: 45 NSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13 Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = -2 Query: 111 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 533 G +FI L+ +L D F FG +L C + D +G+S+GFGF+ F+N + + K L+G +I+ K+ + ++E+E A +FV + T+E+ + F ++G + A +M D D G+ + FGFV +EN Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRA-----IPREEQEKTA------KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13 Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENVDDAAKAVDALNGKKFDDR 527 IF+ L SID + L F G ++ ++ + G+ +S+G+G+V FENK A+ AI ++ G I+ + + K K KF + +F+ NL + + + ++F ++G + S + + + K FG+V F N++DA KA+DAL G+ D+R Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK-KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13 Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = -2 Query: 33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527 IF+ NL S D AL + F GN+ ++ D +G+S+GFGFV +KE + A + NG ++ + + V ++RE + + N V+V NL + L+ +F E G + A V+ D D G+S+ FGFV + + ++ A+++L+G + R V A Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13 Identity = 53/173 (30.64%), Postives = 85/173 (49.13%), Query Frame = -2 Query: 72 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 560 D + T +IFIKNL+ S ++ L D F F + ++ T G S GFGFV+F KE A I ++G +I+ ++ + +Q ++ KTK N + VKNL T +D+ ++F +G + S V + D ++ F FV F +A A+D L+G Sbjct: 654 DEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL-KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHG 825
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13 Identity = 43/160 (26.88%), Postives = 85/160 (53.12%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKG------FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530 ++F+KNL+ + L D F L ++ ++KG FGFV+F +KE+A+ A ++G +++ ++ + R Q+ ET K ++ + +KNL T +D++K+FG +G++ + V + + +S+ F F + + +A A+ AL G Sbjct: 606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.415e-13 Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = -2 Query: 72 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQ---ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 581 R + S + + ++ + +IF+ NL + L + FS G ++ I T G +G G V+F N + AI + +G D+++FV + ++++ +R + K + V VKNL S + LK IF E G + A V DGDG S G V+F ++ D +A++ NG Sbjct: 145 RELDSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITS-RGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 323 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |