CB304901

Overview
NameCB304901
Unique NameCB304901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:279..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROGU (60S ribosomal protein L32 OS=Drosophila guanche GN=RpL32 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROBF (60S ribosomal protein L32 OS=Drosophila bifasciata GN=RpL32 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            +GID+RVR  FK  +LMPNIGYGS+KKT+H LP+GFKKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   39 RGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+KKTRH LP GF+K +VHNV ELE+LMM NR +CAEIAH  S+KKRK IVERA QL + VT   ARLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            +GID+RVRR+FK  +LMPNIGY S+KKT+H L +GF+KF+VHN+ E E+L+M N++Y AEIAHNVS+K RK IVERAAQL + VTN   RL S+E E
Sbjct:   39 RGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 57/94 (60.64%), Postives = 77/94 (81.91%), Query Frame = -3
Query:  318 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 599
            KGID+RVRR+F+  + MP+IGYGS+KKTRH +P+G K F+V NV ++ELL+MHN+TY AEIAHNVS++KR EI+ RA QL V VTN  A++ ++
Sbjct:   37 KGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = -3
Query:  315 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 599
            +GIDS VRR+F+  + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   33 RGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = -3
Query:  315 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQE 599
            +GIDS VRR+F+  + MP IGYG++KKTR+ +PNG K F+V NV+++ELL+MHN+TY AEIA NVS +KR EIVE+A  L V VTN  A++RSQE
Sbjct:   33 RGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 56/97 (57.73%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            +GID+RVRR+F     MP+IG+GS K T+   P+GFK+FV+ NV ELE+L+M NR Y A I H VS K RK IVERAA+L++ VT   ARLRS+E E
Sbjct:   37 RGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  327 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 599
            KGIDS VRR+F+  +  P IGYGS+KKTR   P+G K ++V N+ +LE+LMMH +TY AEIA NVS+K R  I+ RA  L + VTN   RL
Sbjct:   37 KGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of CB304901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL32_DROGU6.936e-3472.1660S ribosomal protein L32 OS=Drosophila guanche GN... [more]
RL32_DROBF6.936e-3472.1660S ribosomal protein L32 OS=Drosophila bifasciata... [more]
RL32_ICTPU2.018e-3371.1360S ribosomal protein L32 OS=Ictalurus punctatus G... [more]
RL32_APIME2.914e-3271.1360S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE6.718e-2963.92Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR1.267e-2760.6460S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32B_SCHPO8.212e-2761.0560S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32A_SCHPO1.073e-2661.0560S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32_DICDI1.004e-2457.7360S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO6.733e-2154.9560S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_G07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_G07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304901 ID=CB304901; Name=CB304901; organism=Citrus sinensis; type=EST; length=604bp
TTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTGCTATTAAACATCATACGC
TTAACATTGCCCACTAATAGTTATGGAAAATATGCAAAACAATGTTAATA
AAAGGCTTGGCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCAT
GCTCCGCAAAAAACAACAAATTCAAAATATCATTCAGGTGACAAAAATAA
AAAATACATCATAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAA
CCTAGGAAACATTTGGCCAAAAGCAAACACTAACATAAAATATAGAAACC
AATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGAC
CACAACATCCAATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGG
TTGATACGTTGTGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATC
AAGAGTTCCAGTTCATTGACATTGTGCACGACAAACTTCTTAAATCCATT
AGGCAGATAGTGGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCA
TCAGAACACANNCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTC
NGCC
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