CB305079

Overview
NameCB305079
Unique NameCB305079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305079_ssr172 microsatellite CB305079_ssr172:172..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:426..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 77/124 (62.10%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  263 LTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 634
            LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:   35 LTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  263 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 619
            +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   32 TSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 77/120 (64.17%), Postives = 90/120 (75.00%), Query Frame = -1
Query:  263 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 622
            P +  + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   40 PRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.266e-36
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = -1
Query:  263 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 607
            ET+ FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEISG
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  263 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 610
            +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:   44 KETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.654e-36
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 622
            P +  + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   35 PRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.160e-36
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  263 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 619
            +++ E+S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   36 TNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 76/119 (63.87%), Postives = 89/119 (74.79%), Query Frame = -1
Query:  263 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 619
            S + E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   35 SLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 77/124 (62.10%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  263 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            ++PS++  RE   F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   35 SSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.685e-36
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = -1
Query:  263 PSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 622
            PSS + E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+ISG
Sbjct:   33 PSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
The following BLAST results are available for this feature:
BLAST of CB305079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH3.333e-3762.1017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_ORYSJ3.333e-3764.7116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS177_ORYSJ5.685e-3764.1717.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT1.266e-3664.3516.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP12_DAUCA1.654e-3666.3818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS174_ORYSJ1.654e-3663.3317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC2.160e-3663.8717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP13_SOYBN2.821e-3663.8717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.821e-3662.1018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN3.685e-3663.6417.3 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305079 ID=CB305079; Name=CB305079; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACAAAATTAAACAGG
GGGGAAGGGAAGCTCTTGCAAACACACACACACACACAAGGGCTTTGCTT
TCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTAC
ACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCT
CCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCC
TTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAA
CTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCT
GCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACC
TCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATAC
ATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGG
ATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAG
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