CB305079

Overview
NameCB305079
Unique NameCB305079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305079_ssr172 microsatellite CB305079_ssr172:172..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:426..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  320 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 592
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = -1
Query:  317 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 610
            R+    A    D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   47 RDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  317 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 628
            NAP+    R+    A    D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  317 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 628
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  317 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 631
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  317 NAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 628
            NAP  S  R+    A    D KE P ++VF+ D+PGL+         +  +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   34 NAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  317 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 610
            R+    A    D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  317 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 631
            ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   28 SSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = -1
Query:  317 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 610
            R+    A    D KE   A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  317 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 577
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
The following BLAST results are available for this feature:
BLAST of CB305079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH1.232e-1544.7915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE4.683e-1543.8817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA1.362e-1438.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN3.035e-1437.7417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ3.035e-1441.4418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN1.153e-1337.7417.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP22_IPONI1.967e-1339.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_IPONI2.570e-1340.7417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE4.383e-1343.8817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE4.383e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305079 ID=CB305079; Name=CB305079; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACAAAATTAAACAGG
GGGGAAGGGAAGCTCTTGCAAACACACACACACACACAAGGGCTTTGCTT
TCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTAC
ACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCT
CCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCC
TTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAA
CTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCT
GCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACC
TCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATAC
ATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGG
ATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAG
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