CB305079

Overview
NameCB305079
Unique NameCB305079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305079_ssr172 microsatellite CB305079_ssr172:172..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:426..1063. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  317 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 628
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  317 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 592
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.841e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = -1
Query:  320 SQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 601
            S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  317 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 628
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
BLAST of CB305079 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = -1
Query:  317 KETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 571
            +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   59 RETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
The following BLAST results are available for this feature:
BLAST of CB305079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH4.383e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ5.724e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ2.841e-1240.0016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH6.329e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]
SP21_STIAU3.141e-1137.65Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305079 ID=CB305079; Name=CB305079; organism=Citrus sinensis; type=EST; length=634bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATTACAAAATATATTTTA
TTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTG
GCTCCTGAAGCTCTTGCAAACACACAAACATAATCACAAAATTAAACAGG
GGGGAAGGGAAGCTCTTGCAAACACACACACACACACAAGGGCTTTGCTT
TCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTAC
ACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCT
CCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCC
TTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAA
CTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCT
GCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTTCAACC
TCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATAC
ATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAATTGGG
ATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAG
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