CB417293

Overview
NameCB417293
Unique NameCB417293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10200 contig Csv1_Contig10200:812..1373. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 6.149e-79
Identity = 144/185 (77.84%), Postives = 160/185 (86.49%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQAS 559
            +TP+SE   RFQE+GLE+GWGD A+RA E I       EAPDP TLE FLG IPMVFNVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRA+E+EMLLRIKQ GLDITP+ILI+TRLLPDA GTTCGQRLEKV GT++  ILRVPFRTE G+VRKWISRFEVWPYLETYT+DVA EIA ELQA+
Sbjct:  226 DTPYSEFHHRFQELGLEKGWGDCAKRAQETIHLLLDLLEAPDPSTLEKFLGTIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRAMENEMLLRIKQCGLDITPKILIVTRLLPDATGTTCGQRLEKVLGTEHCHILRVPFRTENGIVRKWISRFEVWPYLETYTDDVAHEIAGELQAN 410          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 8.031e-79
Identity = 139/184 (75.54%), Postives = 162/184 (88.04%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQA 556
            +TP+SE   RFQE+GLE+GWGD A+R L+ I       EAPDP  LE FLG IPM+FNVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRALE+EMLLRIKQQGLDITP+ILI+TRLLPDAVGTTCGQR+EKV GT+++DILRVPFR+E G++RKWISRF+VWP+LETYTEDVA EI +E+QA
Sbjct:  218 DTPYSEFNHRFQELGLEKGWGDCAKRVLDTIHLLLDLLEAPDPANLEKFLGTIPMMFNVVILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPKILIVTRLLPDAVGTTCGQRVEKVIGTEHTDILRVPFRSENGILRKWISRFDVWPFLETYTEDVANEIMREMQA 401          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.789e-78
Identity = 141/185 (76.22%), Postives = 162/185 (87.57%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQAS 559
            +TP+SE   RFQE+GLE+GWGD A+R+ E I       EAPDP TLE FLG IPMVFNVVI++PHGYFAQ +VLGYPDTGGQVVYILDQVRA+E+EMLLRIKQQGL+ITP+ILI+TRLLPDA GTTCGQRLEKV GT+++ ILRVPFRTE G+VRKWISRFEVWPYLET+T+DVA EIA ELQA+
Sbjct:  226 DTPYSEFHHRFQELGLEKGWGDCAKRSQETIHLLLDLLEAPDPSTLEKFLGTIPMVFNVVIMSPHGYFAQANVLGYPDTGGQVVYILDQVRAMENEMLLRIKQQGLNITPRILIVTRLLPDATGTTCGQRLEKVLGTEHTHILRVPFRTENGIVRKWISRFEVWPYLETFTDDVAHEIAGELQAN 410          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.052e-78
Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQA 556
            +TP+SE   +FQEIG ERGWGDTAER  EM        EAPD  TLETFLG+IPMVFNVVIL+PHGYFAQ++VLGYPDTGGQVVYILDQV ALE EM+ RIK+QGLDI P+ILI+TRLLPDAVGTTC QRLEKV+G +++ ILRVPFRTEKG++RKWISRFEVWPY+ET+TEDVA EIA ELQA
Sbjct:  223 DTPYSEFEHKFQEIGFERGWGDTAERVTEMFHMLLDLLEAPDASTLETFLGKIPMVFNVVILSPHGYFAQENVLGYPDTGGQVVYILDQVPALEREMIKRIKEQGLDIKPRILIVTRLLPDAVGTTCNQRLEKVFGAEHAHILRVPFRTEKGILRKWISRFEVWPYIETFTEDVAKEIALELQA 406          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 6.799e-78
Identity = 143/184 (77.72%), Postives = 161/184 (87.50%), Query Frame = 2
Query:    2 PETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ 553
            PETP+ +   +FQEIGL RGWGDTAE  LEMIQ      EAP PCTLE FLG+  +  NVVI++PHGYFAQD+V GYPDTGGQVVYILDQVRALE EMLLRIKQQGLDITP+ILI+TRLLPDAVGTTCGQRLE+VYG++++DILRVPFRTEKG+VR+WISRFEVWPYLETYTEDV VE+ KELQ
Sbjct:  220 PETPYVKFEHKFQEIGLVRGWGDTAEGVLEMIQLLLVLLEAPVPCTLEKFLGK-SLWLNVVIMSPHGYFAQDNV-GYPDTGGQVVYILDQVRALESEMLLRIKQQGLDITPRILIVTRLLPDAVGTTCGQRLERVYGSEHADILRVPFRTEKGIVRQWISRFEVWPYLETYTEDVGVELIKELQ 401          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.515e-77
Identity = 140/185 (75.68%), Postives = 159/185 (85.95%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQAS 559
            +TP+SE    FQ +GLE+GWGDTA R  E I       EAPDP TLE FLG IPMVFNVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRALE EMLL+IKQQGLDITP+ILI+TRLLPDAVGTTCGQRLE+V GT+++ ILRVPFRT+KG++RKWISRFEVWPYLETY EDVA E+A E+QA+
Sbjct:  220 DTPYSEFNHSFQVLGLEKGWGDTASRVSENIHLLLDLLEAPDPSTLEKFLGTIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRALETEMLLKIKQQGLDITPRILIVTRLLPDAVGTTCGQRLERVLGTEHTHILRVPFRTDKGILRKWISRFEVWPYLETYAEDVAHELAGEMQAT 404          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.584e-77
Identity = 140/183 (76.50%), Postives = 160/183 (87.43%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQ 553
            +TP SE   RFQE+GLE+GWGDTA+R  + I       EAPDP +LE FLG IPM+FNVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRALE+EMLLRIKQQGLDITP+ILI+TRLLPDAVGTTCGQRLEKV GT+++DILRVPFRTE G +RKWISRF+VWPYLETYTEDVA E+ +E+Q
Sbjct:  218 DTPSSEFNHRFQELGLEKGWGDTAKRVHDTIHLLLDLLEAPDPASLEKFLGTIPMMFNVVILSPHGYFAQSNVLGYPDTGGQVVYILDQVRALENEMLLRIKQQGLDITPKILIVTRLLPDAVGTTCGQRLEKVIGTEHTDILRVPFRTENG-IRKWISRFDVWPYLETYTEDVANELMREMQ 399          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 4.407e-77
Identity = 140/185 (75.68%), Postives = 159/185 (85.95%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQAS 559
            +TP+SE   RFQE+GLE+GWGD A+R  E I       EAP+P  LE FLG IPMVFNVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRA+E+EMLLRIKQQGL+ITP+ILI+TRLLPDA GTTCGQRLEKV GT+++ ILRVPFRTE G VRKWISRFEVWPYLETYT+DVA EI+ ELQA+
Sbjct:  226 DTPYSEFHHRFQELGLEKGWGDCAQRVRETIHLLLDLLEAPEPSALEKFLGTIPMVFNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRAMENEMLLRIKQQGLNITPRILIVTRLLPDAHGTTCGQRLEKVLGTEHTHILRVPFRTENGTVRKWISRFEVWPYLETYTDDVAHEISGELQAT 410          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 4.407e-77
Identity = 139/185 (75.14%), Postives = 160/185 (86.49%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQAS 559
            +TP++E   RFQE+GLE+GWGD A+RA E I       EAPDP +LE FLG IPMV NVVIL+PHGYFAQ +VLGYPDTGGQVVYILDQVRA+E+EMLLRIKQQGLDITP+ILI+TR+LPDA GTTCGQRLEKV GT+++ ILRVPF+TE G+VRKWISRFEVWPYLE YT+DVA EIA ELQA+
Sbjct:  226 DTPYTEFHHRFQELGLEKGWGDCAQRASETIHLLLDLLEAPDPSSLEKFLGTIPMVLNVVILSPHGYFAQANVLGYPDTGGQVVYILDQVRAMENEMLLRIKQQGLDITPKILIVTRMLPDAHGTTCGQRLEKVLGTEHTHILRVPFKTEDGIVRKWISRFEVWPYLEAYTDDVAHEIAGELQAN 410          
BLAST of CB417293 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 9.817e-77
Identity = 136/184 (73.91%), Postives = 157/184 (85.33%), Query Frame = 2
Query:    5 ETPFSELALRFQEIGLERGWGDTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQA 556
            +TP+S+   +FQEIG ERGWGDTAE   EM        EAPD CTLETFLG+IPM+FNVVIL+PHGYFAQ++VLGYPDTGGQVVYILDQV A+E EM  RIK+QGLDI P+ILI+TRLLPDAVGTTC  RLEKV+G ++S ILRVPFRTEKG++RKWISRFEVWPY+ET+TEDVA EIA EL+A
Sbjct:  217 DTPYSDFEHKFQEIGFERGWGDTAEHVSEMFHMLLDLLEAPDACTLETFLGKIPMIFNVVILSPHGYFAQENVLGYPDTGGQVVYILDQVPAMEREMTKRIKEQGLDIIPRILIVTRLLPDAVGTTCNLRLEKVFGAEHSHILRVPFRTEKGILRKWISRFEVWPYMETFTEDVAKEIALELKA 400          
The following BLAST results are available for this feature:
BLAST of CB417293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS2_MAIZE6.149e-7977.84Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS2_ORYSJ8.031e-7975.54Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS1_ORYSJ1.789e-7876.22Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS1_DAUCA3.052e-7876.09Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_ALNGL6.799e-7877.72Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS1_TULGE1.515e-7775.68Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_HORVU2.584e-7776.50Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUS3_ORYSJ4.407e-7775.68Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS2_HORVU4.407e-7775.14Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS2_DAUCA9.817e-7773.91Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionEST0366 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P009 similar to sucrose synthase (acc# BAA89049), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417293 ID=CB417293; Name=CB417293; organism=Citrus sinensis; type=EST; length=562bp
ACCAGAAACGCCATTCTCTGAGTTGGCACTAAGATTTCAGGAGATTGGTT
TGGAGAGAGGTTGGGGTGATACTGCTGAGCGCGCACTTGAGATGATTCAG
CTTCTTTTGGATCTTCTTGAGGCACCTGATCCGTGCACTCTTGAGACTTT
CCTTGGCAGAATCCCCATGGTCTTTAATGTTGTGATCCTTACTCCCCACG
GTTACTTTGCCCAAGACGATGTTTTGGGCTACCCTGATACTGGTGGTCAG
GTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGGATGAGATGCTTCT
TCGTATCAAGCAGCAAGGACTTGATATCACCCCTCAAATCCTCATTATTA
CCCGTCTCCTCCCAGATGCAGTAGGCACAACATGTGGTCAGCGACTTGAG
AAAGTTTATGGAACTAAGTATTCAGATATACTTCGAGTTCCCTTTAGAAC
TGAGAAGGGAGTTGTCCGCAAGTGGATCTCACGATTTGAAGTCTGGCCTT
ATCTAGAGACCTACACCGAGGATGTTGCTGTTGAAATTGCCAAAGAGTTG
CAGGCAAGCCTG
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