CB417295

Overview
NameCB417295
Unique NameCB417295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6248 contig Csv1_Contig6248:7..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NDUV2_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Dictyostelium discoideum GN=ndufv2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 59/114 (51.75%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  110 QASRSFSTALNYHLDSPDNNPDLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCM 451
            Q++ + S AL+ H+++ DNN   P+ F+  N  KV++IL+ YP  Y+QSA+IPLLDLAQ+Q+GGW+ + AM++VA I  +AP+  YEVA+FY+MFNR+K+G+  + VC TTPCM
Sbjct:   28 QSTLTRSDALSRHVETEDNNEHTPFDFTQENLVKVEKILAKYPKQYRQSALIPLLDLAQRQNGGWISLRAMDKVAHICGIAPMTAYEVASFYTMFNRTKIGENFVQVCTTTPCM 141          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE_RICFE (NADH-quinone oxidoreductase subunit E OS=Rickettsia felis GN=nuoE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.248e-23
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            F   N    ++I+  YP + K+SA++PLLDLAQ+Q+GGWLPV A+  VA ++E+  +R YEVATFYSMFN  +VGKYH+ VC TTPC
Sbjct:    7 FDKKNLNLAEDIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMRAYEVATFYSMFNLKRVGKYHIQVCTTTPC 93          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE_RICTY (NADH-quinone oxidoreductase subunit E OS=Rickettsia typhi GN=nuoE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.128e-23
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            F   N    + I+  YP N K+SA++PLLDLAQ+Q+GGWL +SA+  VA ++E+  +R YEVATFYSMFN S VGKYH+ VC TTPC
Sbjct:   12 FDKKNLNLAETIIKKYPPNGKRSAILPLLDLAQRQNGGWLHISAIEYVANMLEMPYMRAYEVATFYSMFNLSPVGKYHIQVCTTTPC 98          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE_RICCN (NADH-quinone oxidoreductase subunit E OS=Rickettsia conorii GN=nuoE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            F   N    +EI+  YP + K+SA++PLLDLAQ+Q+GGWLPV A+  VA ++ +  IR YEVATFY+MFN  +VGKYH+ VC TTPC
Sbjct:   10 FDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIRAYEVATFYTMFNLKRVGKYHIQVCTTTPC 96          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE_RICPR (NADH-quinone oxidoreductase subunit E OS=Rickettsia prowazekii GN=nuoE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.242e-22
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            F   N    + I+  YP   K+SA++PLLDLAQ+Q+GGWL VSA+  VA ++E+  +R YEVATFY+MFN + +GKYH+ VC TTPC
Sbjct:   12 FDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMPYMRAYEVATFYTMFNLNPIGKYHIQVCTTTPC 98          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE_RICBR (NADH-quinone oxidoreductase subunit E OS=Rickettsia bellii (strain RML369-C) GN=nuoE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  182 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            + F   N    ++I+  YP   K+SA++PLLDLAQ+Q+GGWLPV A+  VA ++E+  +R YEVATFY+MFN   VGK H+ VC TTPC
Sbjct:    8 FSFDKKNLSLAEDIIKKYPPEGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLEMPYMRAYEVATFYTMFNLKPVGKNHIQVCTTTPC 96          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE1_RHIME (NADH-quinone oxidoreductase subunit E 1 OS=Rhizobium meliloti GN=nuoE1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.023e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVG-KYHLLVCGTTPCM 451
            FS  N    +  +  YP   +QSAVIPLL  AQ+Q G W+  +A+  VA ++ +A IRV EVATFY+ F    VG + H+ VCGTTPCM
Sbjct:   18 FSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIRVLEVATFYTQFQLQPVGTRAHVQVCGTTPCM 105          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NUOE2_RHIME (NADH-quinone oxidoreductase subunit E 2 OS=Rhizobium meliloti GN=nuoE2 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 33/85 (38.82%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  197 TNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCM 451
            T +E+++   + YP   ++SA++P L +AQ++HG  LP   + EVA+I+ V  + VYE+ATFY++F+   +G++HL +C    CM
Sbjct:    2 TMREEIEAAAARYPD--RRSAIMPALMIAQKEHGH-LPGPVLEEVAQILGVERVWVYELATFYTLFHTEPIGRFHLQLCDNVSCM 83          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NQO2_PARDE (NADH-quinone oxidoreductase chain 2 OS=Paracoccus denitrificans GN=nqo2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.389e-12
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  182 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKY-HLLVCGTTPCM 451
            ++F+  N E  +  ++ YP   +QSA+IP+L  AQ+Q G WL   A+   A ++ +  IR  EVATFY MF    VG   H+ +CGTT CM
Sbjct:   13 FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEG-WLSRPAIEYCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCM 102          
BLAST of CB417295 vs. ExPASy Swiss-Prot
Match: NQO2_THET8 (NADH-quinone oxidoreductase subunit 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  188 FSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPC 448
            F D  ++ ++E  + YP   +++A++PLL   QQ+ G W+    + E+A+++   P  V  VA+FYS +     GKYHL VC T  C
Sbjct:    3 FFDDKQDFLEETFAKYPPEGRRAAIMPLLRRVQQEEG-WIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSC 88          
The following BLAST results are available for this feature:
BLAST of CB417295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
NDUV2_DICDI8.921e-3051.75NADH dehydrogenase [ubiquinone] flavoprotein 2, mi... [more]
NUOE_RICFE1.248e-2356.32NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]
NUOE_RICTY2.128e-2357.47NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]
NUOE_RICCN2.780e-2356.32NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]
NUOE_RICPR5.242e-2254.02NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]
NUOE_RICBR6.847e-2252.81NADH-quinone oxidoreductase subunit E OS=Rickettsi... [more]
NUOE1_RHIME4.023e-1448.31NADH-quinone oxidoreductase subunit E 1 OS=Rhizobi... [more]
NUOE2_RHIME3.766e-1238.82NADH-quinone oxidoreductase subunit E 2 OS=Rhizobi... [more]
NQO2_PARDE8.389e-1241.76NADH-quinone oxidoreductase chain 2 OS=Paracoccus ... [more]
NQO2_THET84.163e-1135.63NADH-quinone oxidoreductase subunit 2 OS=Thermus t... [more]

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Properties
Property NameValue
Genbank descriptionEST0368 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P013 similar to NADH ubiquinone oxidoreductase (acc# NP_567244), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417295 ID=CB417295; Name=CB417295; organism=Citrus sinensis; type=EST; length=452bp
ACCAAATCTGTGGCGTCACTCTTGTTGAGCTTAGAACTCGTCGAAAATGC
TAGCTCGTCTCGCGGCCAAGCGTCTTCTCGAGATTCGTCAAGCAATCCGT
CCATCTCTTCAGGCATCTCGATCTTTCTCCACTGCCCTGAACTATCATCT
TGATTCTCCAGATAACAATCCGGACCTTCCGTGGAAGTTCTCTGATACAA
ACAAAGAAAAGGTTAAGGAGATATTGTCTCACTATCCATCCAATTACAAG
CAATCTGCTGTCATTCCACTGCTAGATCTTGCACAGCAGCAGCATGGAGG
GTGGCTTCCTGTTTCAGCAATGAATGAGGTAGCTAAAATTATAGAGGTTG
CTCCCATCCGTGTATATGAGGTTGCAACATTTTATTCAATGTTCAACAGA
TCAAAGGTAGGCAAATACCACCTACTGGTCTGTGGCACAACACCTTGTAT
GG
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