CB417297

Overview
NameCB417297
Unique NameCB417297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:800..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STAA8 (Chaperone protein dnaK OS=Staphylococcus aureus (strain NCTC 8325) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.797e-25
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S + +V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D             E  GG M  LI RNTTIPT K Q++ST
Sbjct:  295 KDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEI-GKEPNKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYST 398          

HSP 2 Score: 62.7734 bits (151), Expect = 1.797e-25
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS  +QT I +  +  G    +     +TR++FEEL+  L R+ MEP  +
Sbjct:  206 IIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STAA3 (Chaperone protein dnaK OS=Staphylococcus aureus (strain USA300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.797e-25
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S + +V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D             E  GG M  LI RNTTIPT K Q++ST
Sbjct:  295 KDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEI-GKEPNKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYST 398          

HSP 2 Score: 62.7734 bits (151), Expect = 1.797e-25
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS  +QT I +  +  G    +     +TR++FEEL+  L R+ MEP  +
Sbjct:  206 IIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STAA2 (Chaperone protein dnaK OS=Staphylococcus aureus (strain JH1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.797e-25
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S + +V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D             E  GG M  LI RNTTIPT K Q++ST
Sbjct:  295 KDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEI-GKEPNKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYST 398          

HSP 2 Score: 62.7734 bits (151), Expect = 1.797e-25
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS  +QT I +  +  G    +     +TR++FEEL+  L R+ MEP  +
Sbjct:  206 IIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STAA1 (Chaperone protein dnaK OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.797e-25
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S + +V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D             E  GG M  LI RNTTIPT K Q++ST
Sbjct:  295 KDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEI-GKEPNKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYST 398          

HSP 2 Score: 62.7734 bits (151), Expect = 1.797e-25
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V EFK++N  D+S +  AL+RL+ A E+AK+ LS  +QT I +  +  G    +     +TR++FEEL+  L R+ MEP  +
Sbjct:  206 IIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_ANATD (Chaperone protein dnaK OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.797e-25
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DAK+    +  V+LVGGSTRIP VQ+ ++    GKE  K INPDE           +L+G+    V+D             ET GGV T +I RNTTIPT+K Q+F+T
Sbjct:  297 DAKLTPEQIDKVILVGGSTRIPYVQEFVKKL-TGKEPFKGINPDECVAIGAAIQAGVLAGQ----VKDILLLDVTPLSLGIETLGGVFTKIIERNTTIPTRKSQIFTT 399          

HSP 2 Score: 56.9954 bits (136), Expect = 1.797e-25
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYTTITRARFEELNMDLFRKCMEPVE 251
            R++++   EF +++  D+  +  AL+RL+ A ERAK  LSS  QTTI +  +    +        +TRA+FEEL  DL  K  EPVE
Sbjct:  206 RIIDYIADEFMKEHGIDLRQDKVALQRLKDAAERAKIELSSALQTTINLPFITADANGPKHIDMVLTRAKFEELIKDLVEKTREPVE 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSW (Chaperone protein dnaK OS=Geobacillus sp. (strain WCH70) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.797e-25
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  259 RDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            +DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++GE    V+D             ET GGV T LI RNTTIPT K Q+F+T
Sbjct:  294 QDAGLTPSDIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQIFTT 397          

HSP 2 Score: 59.3066 bits (142), Expect = 1.797e-25
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++ V++FK+++  D+S +  AL+RL+ A E+AK+ LS   QT I +  +       +   TT+TRA+FEEL+  L  + M PV +
Sbjct:  205 IIDYLVEQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANETGPLHLETTLTRAKFEELSAHLVERTMGPVRQ 291          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRZT (Chaperone protein dnaK OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.797e-25
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 1.797e-25
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++H V EFK++N  D+S +  A++RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDHLVAEFKKENGIDLSTDKMAMQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKVPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRZP (Chaperone protein dnaK OS=Streptococcus pneumoniae (strain P1031) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.797e-25
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 1.797e-25
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++H V EFK++N  D+S +  A++RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDHLVAEFKKENGIDLSTDKMAMQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKVPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRZJ (Chaperone protein dnaK OS=Streptococcus pneumoniae (strain JJA) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.797e-25
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 1.797e-25
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++H V EFK++N  D+S +  A++RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDHLVAEFKKENGIDLSTDKMAMQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKVPVRQ 292          
BLAST of CB417297 vs. ExPASy Swiss-Prot
Match: DNAK_STRR6 (Chaperone protein dnaK OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.797e-25
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  262 DAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFST 585
            DA +  S + +V+LVGGSTRIP V + ++    GKE  KS+NPDE           +++G+    V+D             ET GGV T LI RNTTIPT K QVFST
Sbjct:  296 DAGLSLSEIDEVILVGGSTRIPAVVEAVKAE-TGKEPNKSVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFST 398          

HSP 2 Score: 59.6918 bits (143), Expect = 1.797e-25
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    3 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYTTITRARFEELNMDLFRKCMEPVEK 254
            ++++H V EFK++N  D+S +  A++RL+ A E+AK+ LS    T I +  +  G    +    T+TRA+F++L  DL  +   PV +
Sbjct:  205 KIIDHLVAEFKKENGIDLSTDKMAMQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEMTLTRAKFDDLTRDLVERTKVPVRQ 292          
The following BLAST results are available for this feature:
BLAST of CB417297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_STAA81.797e-2539.45Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_STAA31.797e-2539.45Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_STAA21.797e-2539.45Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_STAA11.797e-2539.45Chaperone protein dnaK OS=Staphylococcus aureus (s... [more]
DNAK_ANATD1.797e-2542.59Chaperone protein dnaK OS=Anaerocellum thermophilu... [more]
DNAK_GEOSW1.797e-2542.20Chaperone protein dnaK OS=Geobacillus sp. (strain ... [more]
DNAK_STRZT1.797e-2543.52Chaperone protein dnaK OS=Streptococcus pneumoniae... [more]
DNAK_STRZP1.797e-2543.52Chaperone protein dnaK OS=Streptococcus pneumoniae... [more]
DNAK_STRZJ1.797e-2543.52Chaperone protein dnaK OS=Streptococcus pneumoniae... [more]
DNAK_STRR61.797e-2543.52Chaperone protein dnaK OS=Streptococcus pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionEST0370 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P015 similar to 70 kDa heat shock protein (acc# AAL24367), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417297 ID=CB417297; Name=CB417297; organism=Citrus sinensis; type=EST; length=590bp
ACAGAATGGTGAACCACTTTGTTCAAGAGTTCAAGAGGAAAAACAAGAAG
GATATTAGTGGAAACCCCAGAGCGTTGAGGAGGTTGAGAACTGCCTGTGA
AAGGGCTAAGAGGACCCTGTCATCAACCGCACAGACTACAATTGAGATTG
ATTCTTTATATGAGGGTATTGATTTCTACACAACCATTACAAGGGCTAGA
TTCGAAGAGTTGAACATGGATTTGTTCAGGAAGTGTATGGAGCCAGTGGA
GAAATGCGAGAGATGCTAAGATGGACAAGAGCAGTGTCCATGATGTGGTT
CTTGTTGGTGGGTCTACTAGGATCCCAAAAGTCCAGCAACTGTTGCAGGA
CTTCTTCAATGGAAAAGAGCTATGCAAGAGCATCAACCCTGATGAAGCGG
TTGCCTACGGTGCTGCTGTGCAGGCTGCAATCTTGAGTGGTGAGGGTAAT
GAGAAGGTTCAGGACCTCTTATTGCTTGACGTCACCCCTCTATCGCTGGG
TTTGGAGACTGCTGGTGGAGTCATGACTGTGTTGATTCCAAGGAACACCA
CTATTCCAACCAAGAAGGAGCAGGTGTTCTCCACATACTC
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