CB417302

Overview
NameCB417302
Unique NameCB417302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3579 contig Csv1_Contig3579:158..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.328e-45
Identity = 92/153 (60.13%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPFSLD+WDPF                    + +AF N R+DWKETPE+HVFKADLPG++         +   L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KA MENGVLTVTVPKA E KK  V+AI+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD------NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.250e-44
Identity = 94/158 (59.49%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFR-----DXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPFSLD+WDPF                         E +AF   R+DWKETPEAHVFKAD+PGL+         D   LQISG+RN E+E+K+D WHRVERSSG F RRFRLP+NAK ++IKASMENGVLTVTVPK EEAKK +V++IQISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPK-EEAKKPDVKSIQISG 161          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.633e-44
Identity = 91/153 (59.48%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPFSLD+WDPF                    + +AF N R+DWKETPE+HVFKADLPG++         +   L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KA +ENGVLTVTVPKA E KK  V+AI+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD------NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 150          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.204e-44
Identity = 95/164 (57.93%), Postives = 113/164 (68.90%), Query Frame = 2
Query:   62 MSLIPSFFGN--RRSSVFDPFSLD-VWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            MSLIP+ + N  RRS++FDPFSLD +WDPF                    E +AF N R+DWKETPEAHVFKADLPG++         D   L+ISGQR  EKE+K+DTWHRVERSSG F R+FRLPENAK+D++KA MENGVLTVTVPK  EA K  V+AI +
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF---FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK-NEAPKPQVKAINV 160          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 91/153 (59.48%), Postives = 108/153 (70.59%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPFSLD+WDPF                    +A+AF   R+DWKETPEAHVFKAD+PGL+         D   LQISG+R  E+E+K+D WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVPK EE KK +V++IQI+G
Sbjct:    5 RRSNVFDPFSLDLWDPF--DGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQITG 154          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.252e-43
Identity = 90/158 (56.96%), Postives = 108/158 (68.35%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFR-----DXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPFSLD+WDPF                         E +AF   R+DWKETPEAHVFKAD+PGL+         D   LQISG+R+ E+E+K+D WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVPK EE KK +V++IQ++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQVTG 161          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.958e-43
Identity = 92/153 (60.13%), Postives = 107/153 (69.93%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPF+ D WDPF                    + +AF N RVDWKETPE+HVFKADLPG++         +   L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KASMENGVLTVTVPKA E KK  V+AI+ISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVPATSDR------DTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKA-EVKKPEVKAIEISG 149          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.606e-42
Identity = 90/156 (57.69%), Postives = 106/156 (67.95%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVWDP---FRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RR + FDPFSLD+WDP   F                    +A+AF   R+DWKETPE HVFKAD+PGL+         D   LQISG+R+ E+E+KSD WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVPK EE KK +V++IQISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK-EEPKKPDVKSIQISG 159          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.098e-40
Identity = 88/154 (57.14%), Postives = 105/154 (68.18%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVW-DPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RRS+VFDPF+ D+W DPF                    E +AF N RVDWKETPEAHVFK DLPG++         D   L +SG+R+ EKEDK+D WHRVERSSG F RRFRLPE+AK++ +KA +ENGVLTVTVPKA E KK  V+AI+ISG
Sbjct:    5 RRSNVFDPFA-DLWADPF-----DTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIEISG 151          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.025e-38
Identity = 87/154 (56.49%), Postives = 104/154 (67.53%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVW-DPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            RR++VFDPF+ D+W DPF                    E +AF N R+DWKETPEAHVFKADLPG++         D   L +SG+R  EKEDK+D WHRVERSSG F RRFRL E+AK++ +KA +ENGVLTVTVPKA E KK  V+AIQISG
Sbjct:    5 RRTNVFDPFA-DLWADPF-----DTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA-EVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CB417302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HS16B_ORYSJ7.328e-4560.1316.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS17A_ORYSJ1.250e-4459.4917.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ1.633e-4459.4816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_CHERU6.204e-4457.9318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS174_ORYSJ2.357e-4359.4817.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ5.252e-4356.9618.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ8.958e-4360.1316.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS177_ORYSJ2.606e-4257.6917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT7.098e-4057.1416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT1.025e-3856.4916.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionEST0377 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P022 similar to small heat shock protein (acc# 1107298A), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417302 ID=CB417302; Name=CB417302; organism=Citrus sinensis; type=EST; length=730bp
ACTTTTTATTAGTCGATAGAGGAAAGAGAGAGGGAAAACAAAAAAAGGAA
AGATAAGGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACCGACGCAGC
AGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTCAGGGACTT
CCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCAGTTCCCTG
GAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGGAAACCCCA
GAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAAGAGGAGGT
GAAGGTCGAGGTTGAGGATGACAGGGCGCTTCAGATAAGCGGGCAGAGGA
ACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGGAGCGTAGC
AGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCGAAGATGGA
CCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTACCGTTCCTA
AAGCGGAGGAGGCCAAGAAAGCTAATGTCAGGGCTATTCAAATCTCTGGC
TGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAAGTTTTATG
GTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCTACTGAGAT
CGAGTGTCTTTGTTTGTAATGGGAATGTCAGAATGGGAATAATAATGTAA
TTTCGTAAAAAAAAAAAAAAAAAAAAAAAA
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