CB417302

Overview
NameCB417302
Unique NameCB417302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3579 contig Csv1_Contig3579:158..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 75/159 (47.17%), Postives = 89/159 (55.97%), Query Frame = 2
Query:   92 RRSSVFDPFSLDVW---DPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKE---DKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            R  +V DP S+D W   DPF                          N RVDWKETP AHVF ADLPG+R         D   L ISG+R  E++      + WH VERSSG F RRFRLP  A++D++ ASM+NGVLTVTVPK EE KK  ++AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPF------------GAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPK-EETKKPQLKAIPISG 150          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 2
Query:  329 LQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            LQISG+RN+EKEDK+DTWHRVERSSG F R FRLP+NAK+D++KASMENGVLTVTVPK EE KK +V+AI+ISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPK-EEIKKPDVKAIEISG 74          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 58/117 (49.57%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  203 EAS-AFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            EAS A    RVDWKETPE HV   D+PGL+         ++R L++SG+R  E+E K D WHRVERS G F R+FRLP+N  +D +KA +ENGVLT+T+ K    K    R + I+G
Sbjct:   59 EASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAG 175          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  221 NTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            + RVDWKETPE HV   D+PGL+         ++R L++SG+R  E++ K D WHRVERS G F R+F+LP+N  +D +KA MENGVLT+T+ K    K    R + I
Sbjct:   74 HARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKLSHDKIKGPRMVSI 181          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 2
Query:  110 DPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQIS 547
            +P S+D+ +PF D                   A       +DWKET  AHVF AD+PG+R         +++ L+ISGQR    E+K + WHRVERSS  F R  RLP NA  D + A+++NGVLT+T+PK +  +K + R I I+
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAA--AAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPK-DNDRKPHARIIPIT 176          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  227 RVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQIS 547
            RVDWKET E H    D+PGL+         ++  L++SG+R  E+E K D WHRVERS G F R+F+LP+N  M+ +KA +ENGVLT+ + K    K    R + I+
Sbjct:   72 RVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIA 178          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  104 VFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLP-GLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRA 535
            +FD  + D W+PF                    + SAF NT ++ +ET EA+VF+ADLP G++         +   L I+G+R++ +E+K    H +ERS   F  RF LP++A +D ++ASM+ G+LTVTVPK    K+  + A
Sbjct:    6 LFDTLAFDAWNPFS-----IFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKVVTDKQPAIAA 145          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  200 GEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXD-DRALQISGQRNI-----EKEDKSD--TWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            GE +A    R DWKETPEAHV   D+PG+R         +  R L++SG+R       E+E + D   WHR ER++G F RRFR+P  A + R+ A +++GVLTVTVPK    +    R + I G
Sbjct:   64 GEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVPKVPGHRGREPRVVAIDG 188          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  227 RVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRN----IEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQIS 547
            RVDW+ET +AH    D+PG+R         D+R L+ISG+R      E++   D WHR ERS G F R+ RLP+NA +D I AS++NGVLTV   K    +    R + I+
Sbjct:   77 RVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQIKGPRVVGIA 187          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  203 EASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 544
            +A A   T  D KE P ++VF  D+PGL+         +D  L ISG+R  E+E +   + R+ER  G F R+F LPENA  D I A  ++GVLTVTV K    +    + I++
Sbjct:   39 DAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEV 152          
The following BLAST results are available for this feature:
BLAST of CB417302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HS166_ORYSJ1.483e-2947.1716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN2.619e-2678.38Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN1.300e-2549.5722.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA3.201e-2448.1522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS189_ORYSJ6.037e-2339.7318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH8.717e-2244.8622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ8.159e-2035.8617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ2.374e-1942.4021.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ1.701e-1743.2423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.219e-1539.4717.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionEST0377 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P022 similar to small heat shock protein (acc# 1107298A), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417302 ID=CB417302; Name=CB417302; organism=Citrus sinensis; type=EST; length=730bp
ACTTTTTATTAGTCGATAGAGGAAAGAGAGAGGGAAAACAAAAAAAGGAA
AGATAAGGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACCGACGCAGC
AGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTCAGGGACTT
CCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCAGTTCCCTG
GAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGGAAACCCCA
GAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAAGAGGAGGT
GAAGGTCGAGGTTGAGGATGACAGGGCGCTTCAGATAAGCGGGCAGAGGA
ACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGGAGCGTAGC
AGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCGAAGATGGA
CCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTACCGTTCCTA
AAGCGGAGGAGGCCAAGAAAGCTAATGTCAGGGCTATTCAAATCTCTGGC
TGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAAGTTTTATG
GTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCTACTGAGAT
CGAGTGTCTTTGTTTGTAATGGGAATGTCAGAATGGGAATAATAATGTAA
TTTCGTAAAAAAAAAAAAAAAAAAAAAAAA
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