CB417306

Overview
NameCB417306
Unique NameCB417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.502e-22
Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 3
Query:   93 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++ ++DW+ETP AHVF+ DLPGL KE+V +++  D +L IS ER  E EDK D WH  ER   G FTR+FRLP++VK+D+++A+M +G
Sbjct:   44 VNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVER-SSGQFTRRFRLPENVKMDQVKAAMENG 130          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.267e-22
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            +T++DWKETP AHVF+ DLPGL  E+V ++V  DR+L IS ER  E EDK DKW   ER   G F R+FRLP++ K+D+++ASM +G
Sbjct:   46 NTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVER-SSGKFMRRFRLPENAKMDQVKASMENG 131          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.267e-22
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DW+ETP AHVF+ DLPGL KE+V ++V    IL IS ER  E E+K DKWH  ER   G FTR+FRLP++ K++EI+ASM +G
Sbjct:   49 NAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVER-SSGKFTRRFRLPENAKMEEIKASMENG 134          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.573e-22
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP AHVF++DLPG+ KE+V ++V    +L +S ER  E EDK DKWH  ER   G F R+FRLP+D KV+E++A + +G
Sbjct:   43 NARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVER-SSGKFVRRFRLPEDAKVEEVKAGLENG 128          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   54 PVGISSLVHPYGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            P G SS    + G   ++DWKETP AHVF+ D+PGL KE+V ++V    +L IS ER +E E+K DKWH  ER   G F R+FRLP++ K ++I+ASM +G
Sbjct:   41 PRGTSSETAAFAG--ARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVER-SSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP AHVF+ DLPGL KE+V ++V    +L IS ER +E E+K DKWH  ER   G F R+FRLP++ K++E++A+M +G
Sbjct:   51 NARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERA-SGKFMRRFRLPENAKMEEVKATMENG 136          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   54 PVGISSLVHPYGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            P G SS    + G   ++DWKETP AHVF+ D+PGL KE+V ++V    IL IS ER +E E+K D+WH  ER   G F R+FRLPD+ K ++I+ASM +G
Sbjct:   41 PRGASSETAAFAG--ARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVER-SSGKFLRRFRLPDNAKPEQIKASMENG 138          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.613e-21
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP +HVF+ DLPG+ KE+V ++V    +L IS +R +E EDK DKWH  ER   G F R+FRLP++ KVD+++ASM +G
Sbjct:   41 NARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVER-SSGQFMRRFRLPENAKVDQVKASMENG 126          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.718e-21
Identity = 45/87 (51.72%), Postives = 65/87 (74.71%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKET  AHVF+ DLPG+ KE+V +++  D +L IS ER  E E+K D WH  ER  GG F+R+FRLP++VK+D+++ASM +G
Sbjct:   45 NARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGG-FSRKFRLPENVKMDQVKASMENG 130          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.162e-21
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 3
Query:   93 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++T++DWKET  AHV + D+PGL KE+V +Q+  DR+L IS ER  E EDK D WH  +R   G F R+FRLP++ KV++++A M +G
Sbjct:   45 VNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDR-SSGKFMRRFRLPENAKVEQVKACMENG 131          
The following BLAST results are available for this feature:
BLAST of CB417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HS17B_ARATH2.502e-2252.2717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLPE4.267e-2255.1717.7 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH4.267e-2255.1717.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS16A_WHEAT5.573e-2251.7216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS181_ORYSJ2.766e-2149.5018.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ARATH2.766e-2151.7218.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ORYSJ2.766e-2150.5017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ3.613e-2151.7216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17A_ARATH4.718e-2151.7217.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP15_SOYBN6.162e-2150.0017.6 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionEST0382 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P027 similar to 17.7 kDa heat shock protein, class I (acc# AAN64316), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417306 ID=CB417306; Name=CB417306; organism=Citrus sinensis; type=EST; length=357bp
TATATAATATAATTTAAACGAGAAACTAGAGTTGAACAAAAATGTCTCTC
CTCCCTGTTGGGATATCATCTCTCGTCCATCCATATGGAGGCATAGACAC
CCAGATGGACTGGAAAGAAACTCCACATGCCCACGTATTCGAGATCGATC
TTCCAGGGCTTGCAAAAGAGGATGTGACGCTTCAAGTTCATGGAGACAGG
ATACTTCACATAAGTGCTGAGAGGAAAGAGGAGCCAGAGGACAAAGGCGA
CAAGTGGCACTGCCGGGAGAGGCCACACGGCGGCAGCTTCACCAGGCAGT
TTCGTTTGCCTGATGATGTTAAGGTCGATGAGATTAGGGCTTCAATGCGT
GACGGGG
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