CB417306

Overview
NameCB417306
Unique NameCB417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.162e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            +T +DWKETP AHVF+ DLPGL KE+V ++V   ++L IS ER +E E+K +KWH R     G F R+FRLP++  VDE++A M +G
Sbjct:   51 NTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWH-RVEFSSGKFLRRFRLPENANVDEVKAGMENG 136          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.048e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + +MDWKETP AHVF+ DLPG+ KE+V ++V    +L +S ER +E EDK DKWH  ER   G F R+FRL +D KV+E++A + +G
Sbjct:   43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER-SSGKFVRRFRLLEDAKVEEVKAGLENG 128          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP +HVF+ DLPG+ KE+V ++V    +L IS +R +E EDK DKWH  ER   G F R+FRLP++ KVD+++A M +G
Sbjct:   42 NARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVER-SSGQFMRRFRLPENAKVDQVKAGMENG 127          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DW+ETP AHVF+ D+PGL KE+V ++V    IL IS ER  E E+K D WH  ER   G F R+FRLP++ KV+E++ASM +G
Sbjct:   48 NAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVER-SSGKFMRRFRLPENAKVEEVKASMENG 133          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 3
Query:   93 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++ ++DWKETP AHV + DLPG+ KE+V ++V   R+L IS ER  E E+K D WH  ER   G F R+FRLP++ K+DE++A M +G
Sbjct:   43 VNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVER-SSGKFIRRFRLPENAKMDEVKAMMENG 129          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.342e-20
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP +HVF+ DLPG+ KE+V ++V    +L IS +R +E EDK DKWH  ER   G F R+FRLP++ KVD+++A + +G
Sbjct:   42 NARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVER-SSGQFMRRFRLPENAKVDQVKAGLENG 127          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP AHVF+ DLPG+ KE+V ++V    +L IS +R  E E+K D WH  ER   G F R+FRLP++ KVD+++A M +G
Sbjct:   54 NARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVER-SSGQFMRKFRLPENAKVDQVKAGMENG 139          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKET  AHVF+ DLPG+ KE+V +++  D +L IS ER  E E+K D WH  ER   G F+R+F+LP++VK+D+++ASM +G
Sbjct:   47 NARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVER-SSGQFSRKFKLPENVKMDQVKASMENG 132          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  102 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++DWKETP  HVF+ D+PGL KE+V ++V    IL IS ER  E E+K DKWH  ER   G F R+FRLP++ K ++I+ASM +G
Sbjct:   53 RIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVER-SSGKFLRRFRLPENTKPEQIKASMENG 136          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.994e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  102 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++DWKETP AHVF+ D+PGL KE+V ++V    +L IS ER +E E+K DKWH  ER   G F R+FRLP++ K ++I+ASM +G
Sbjct:   48 RIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVER-SSGKFLRRFRLPENTKPEQIKASMENG 131          
The following BLAST results are available for this feature:
BLAST of CB417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP12_DAUCA6.162e-2151.7218.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_WHEAT8.048e-2151.7216.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS16B_ORYSJ1.051e-2050.5716.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP17_ARATH1.373e-2051.7217.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN2.342e-2050.0017.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS16A_ORYSJ2.342e-2049.4316.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_CHERU3.994e-2049.4318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS178_ARATH3.994e-2049.4317.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS177_ORYSJ3.994e-2052.9417.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ3.994e-2052.9417.4 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionEST0382 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P027 similar to 17.7 kDa heat shock protein, class I (acc# AAN64316), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417306 ID=CB417306; Name=CB417306; organism=Citrus sinensis; type=EST; length=357bp
TATATAATATAATTTAAACGAGAAACTAGAGTTGAACAAAAATGTCTCTC
CTCCCTGTTGGGATATCATCTCTCGTCCATCCATATGGAGGCATAGACAC
CCAGATGGACTGGAAAGAAACTCCACATGCCCACGTATTCGAGATCGATC
TTCCAGGGCTTGCAAAAGAGGATGTGACGCTTCAAGTTCATGGAGACAGG
ATACTTCACATAAGTGCTGAGAGGAAAGAGGAGCCAGAGGACAAAGGCGA
CAAGTGGCACTGCCGGGAGAGGCCACACGGCGGCAGCTTCACCAGGCAGT
TTCGTTTGCCTGATGATGTTAAGGTCGATGAGATTAGGGCTTCAATGCGT
GACGGGG
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