CB417311

Overview
NameCB417311
Unique NameCB417311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:278..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.160e-48
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQ---SMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRR 481
            LP++FKH+NFSSF+RQLNTYGFRK+DPDRWEFAN+GFL GQ+HLLK IKRRR +S    S Q  G   CLEVGQ+GLD E++RLKRD+N+L+AE+V+LR  QQ ++  + AME+RL   E+KQ QMM FLA+A++NP FF QL+      + L    + ++ R
Sbjct:   77 LPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALG--TCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTR 237          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.160e-48
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAH--RRELGGVQTGRKRRL 484
            LPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL G+K LLK+I RR+  HV Q+ QQ   +     AC+EVG++G++ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  +  ++   E++QQQMM+FLAKA+++P F  QLVQ N +   R++ G  + +KRRL
Sbjct:   67 LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPG--SNKKRRL 234          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 97/173 (56.07%), Postives = 121/173 (69.94%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------SQSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGG--VQTGRKRR 481
            LPK FKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLL++I RR+         Q  Q   G+     AC+EVG++GL+ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  M  RL   E +QQQ+M+FLAKA+++P F  Q +Q    + E       T +KRR
Sbjct:   77 LPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRR 249          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 99/181 (54.70%), Postives = 126/181 (69.61%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-----------SQSMQQRGG-----EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQ----SNAHRRELGGVQTGRKRRL 484
            LPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK I RR+ V           SQ + Q  G      +C+EVG++GL+ E+E+LKRD+NVLM E+V+LRQ QQ + ++L  +   L   E++QQQ+M+FLAKA++NP+F  Q +Q    SN H  E       +KRRL
Sbjct:   92 LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTE-----ANKKRRL 267          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 102/226 (45.13%), Postives = 142/226 (62.83%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQL-VQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFLSSPVDNESSSD 658
            LPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQK +LK+I RR+           +Q     AC+EVG++GL+ E+ERL+RD+NVLM E+VRLRQ QQ +   L  +  ++   E++QQQMM+FLAKA+++P F  Q   QSN   + +   ++ +KRRL     M +    ++    GL    +V Y     +   +M  +I+   ++P     SS+
Sbjct:   63 LPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHIS--ESNKKRRLPVEDQMNSGSHGVN----GLS-RQIVRYQSSMNDATNTMLQQIQQMSNAPSHESLSSN 281          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.026e-38
Identity = 94/210 (44.76%), Postives = 133/210 (63.33%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSM--QQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPV--GLDCGPVVDYTVQDQNELTSMETEIET 619
            LP++FKH+NFSSF+RQLNTYGFRKV PDRWEFANE FL GQKHLLK IKRRR VS+ +   Q   +A +  GQ    GE+  LKRDR  L AE++ L+Q     + QL AME+ + + E++QQQ + F AK L NP+F QQ++ +  ++  L G    +++RL     MEN +E  + +P+  G++   V++  V   +       ++ET
Sbjct:  135 LPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRR-VSKPLVDSQLRNKASVVFGQPEAPGEVVSLKRDRAALRAEVIMLKQQYNACKSQLIAMEEMVRNIERRQQQTIGFFAKVLTNPAFVQQVLLNYVNKNGLRG--AAKRQRL-----MEN-EEQHADSPLNKGMEAASVMEADVSPGSTGCGTVGKVET 335          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.456e-38
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS---------MQQRGGEACLEVGQY-GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRR 445
            L ++FKHSNF+SFIRQLNTYGFRKV PDRWE+ANEGF+ GQKHLLKTIKRR+  SQ          ++   G   +E+G+Y GL+ E+E LKRD+ +LM ++V LR +QQ S  ++  + +RL   E+ QQQMM  LA  ++NPSF  QLVQ    +R
Sbjct:   89 LHRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLRHYQQTSNLEVQNLIERLQVMEQNQQQMMALLAIVVQNPSFLNQLVQQQQQQR 246          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 89/208 (42.79%), Postives = 125/208 (60.10%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQT-GRKRRLTATPSMENLQETISVAP------VGLDCGPVVDYTVQDQNELTSME 604
            LP+ FKH+NFSSF+RQLNTYGF+K+D +RWEFANE FL G++HLLK IKRR+  SQ+  Q             L+GE+  L+RDR  L  E+VRLR+ Q+  +  L  ME++L  TE KQ+ MM FL K +K PSF Q L      +R L G++   +K+ + ++  +E+  + +   P      +   CG V DY   D+  + SME
Sbjct:   59 LPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQ------------SLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSL-----RKRNLQGIKNREQKQEVISSHGVEDNGKFVKAEPEEYGDDIDDQCGGVFDY--GDELHIASME 247          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 82/170 (48.24%), Postives = 109/170 (64.12%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSMENL 511
            LP +FKH+NFSSF+RQLNTYGFRKV  DRWEFANE FLGGQ+HLL  I+RRR  + +         +  G  G +GE+ERL+RD+  L  E+ RLR+ QQ++R QL  ME R+  TE++Q+Q   FLA+AL++P      V  N  RR    V+  ++R L A    + L
Sbjct:   84 LPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGAGTGSTT--PRAVNCGGGGGEGEVERLRRDKEALARELARLRRQQQEARAQLLDMERRVRGTERRQEQCTEFLARALRSPD-----VLDNIARRHAAAVERKKRRMLAAAADDDGL 246          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.225e-36
Identity = 84/172 (48.84%), Postives = 116/172 (67.44%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLV-QSNAHRRELGGVQTGRKRRLTATPSMENLQ 514
            LP++FKHSNFSSFIRQLNTYGFRK++ +RWEFANE FL GQ+ LLK IKRR   + S      +AC E            L+R++ VLM EIV LRQ QQ ++  + AME R+  TE+KQ+QMM+FLA+A+++PSF  QL+ Q +   +EL   ++ +++R   + SM  L+
Sbjct:   69 LPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPS-SSPSHDACNE------------LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFLHQLLKQRDKKIKELEDNESAKRKR--GSSSMSELE 225          
The following BLAST results are available for this feature:
BLAST of CB417311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HFA2D_ORYSJ2.160e-4857.67Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA1B_ARATH2.160e-4858.82Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA1D_ARATH4.504e-4656.07Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1A_ARATH4.504e-4654.70Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA1E_ARATH1.449e-4445.13Heat stress transcription factor A-1e OS=Arabidops... [more]
HFA6B_ORYSJ2.026e-3844.76Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSFA9_ORYSJ3.456e-3853.16Heat stress transcription factor A-9 OS=Oryza sati... [more]
HFA6A_ARATH1.715e-3742.79Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA6A_ORYSJ1.897e-3648.24Putative heat stress transcription factor A-6a OS=... [more]
HFA7A_ARATH4.225e-3648.84Heat stress transcription factor A-7a OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0387 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P032 similar to heat shock transcription factor (acc# CAA09300), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417311 ID=CB417311; Name=CB417311; organism=Citrus sinensis; type=EST; length=683bp
GCTTCCGAAATATTTCAAGCACAGTAATTTTTCTAGCTTCATTCGCCAGC
TCAACACTTATGGTTTTAGAAAGGTTGATCCTGATAGATGGGAATTTGCC
AATGAAGGATTTTTGGGAGGGCAGAAGCATCTACTGAAAACAATCAAGAG
AAGGCGACACGTCTCACAGAGTATGCAACAGCGAGGAGGAGAAGCTTGTC
TTGAGGTGGGACAATATGGACTGGATGGTGAGCTTGAAAGATTAAAGAGG
GACCGAAATGTGTTGATGGCAGAAATTGTTAGGCTGAGGCAACATCAGCA
GCAATCAAGAGATCAACTCAGTGCAATGGAGGATAGGTTATTAAGCACAG
AAAAGAAGCAGCAGCAGATGATGACATTCCTTGCAAAAGCACTCAAAAAC
CCATCGTTTTTCCAGCAATTAGTTCAGAGTAATGCACACAGAAGAGAACT
GGGAGGTGTTCAAACTGGGAGAAAGCGGAGACTAACGGCCACACCAAGCA
TGGAGAACTTACAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTGT
GGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCAT
GGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCAA
GCAGTGATATCGACAACCCAAATGCTGGTTCAG
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