CB417311

Overview
NameCB417311
Unique NameCB417311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:278..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVA 532
            LP YFKH+NFSSF+RQLNTYGFRK++ +RWEF NEGFL GQ+ LLK+IKRR   S        ++  E    G+  EL +L+ +R+VLM EI  LRQ +Q++R  + AME R+   EKKQ+ MM+FL +A++NPS  QQ+ +    R E   +    +  L     +E+L E  ++A
Sbjct:   68 LPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDPGV--ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVENPSLLQQIFEQKRDREEAAMID---QAGLIKMEEVEHLSELEALA 239          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 78/158 (49.37%), Postives = 108/158 (68.35%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRK 475
            LP +FKH+NFSSF+RQLNTYGFRKV  DRWEFA+E FL   KHLLK I RRR    S  Q+ G      G+ GLD EL  L+R+++ L+ E+ RL+Q   Q+ +Q+S +  RL S E +Q+QM++FLAK L+NP+F +QL + +  ++E+   +  RK
Sbjct:  107 LPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRR---SSPTQQSGLQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQL-KMHRQQKEIDSTRVKRK 260          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 74/144 (51.39%), Postives = 100/144 (69.44%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQ--YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQ 427
            LPKYFKHSNFSSFIRQLN YGFRKVD DRWEFAN+GF+ GQK LLK + RR++V  S Q +         Q   GL  E++ LK D+ VL  E++++RQ+Q+ +  ++  +EDR+   E+ QQ+M++FL   +KNPS   QL+Q
Sbjct:   60 LPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLLVQLLQ 203          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.963e-33
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATP-SMENLQET 520
            LP YFKHSNFSSFIRQLNTYGFRK+DP+RWEFANE F+ GQKHLLK I RR+ +       G  A  +  +   + E+ERL R+++ L A++ + +Q Q  + +Q+  +E R+L  E++Q +M+ FL +A KNP F  +LV+  A    +      +KRRL     S+EN + T
Sbjct:   62 LPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHSHPPG--ALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQFVNKLVKM-AEASSIFTDAFNKKRRLPGLDYSIENTETT 232          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 86/212 (40.57%), Postives = 120/212 (56.60%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRH-------VSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSMENLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIE 616
            LP+ FKH+NFSSF+RQLNTYGFRK+D D+WEFANE FL G+KHLLK I RRR         S + Q +G     EVG     GE+E+L+++R  LM E+V L+Q  + +   +  +  RL + E++Q+Q+++FLAK  +N  F ++L   N   +E GG     K R       +  Q+    +P G   G VV Y   D   L   + E E
Sbjct:   95 LPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPT--EVG-----GEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERL--KNFKGKEKGGALGLEKARKKFIKHHQQPQD----SPTG---GEVVKYEADDWERLLMYDEETE 290          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 81/213 (38.03%), Postives = 124/213 (58.22%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHR--RELGGVQTGRKRRLTA-TPSMENL--QETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFL 625
            LPKYFKH NFSSFIRQLN+YGF+KVD DRWEFANEGF GG+KHLLK IKRR   ++   +       E        E+E LK +++ +  E+++L+Q Q++S+ Q+  +++++   + +QQ M++F AK  K+  F ++LV+    +  REL   +  +K +L     + +NL   E   +A    +  P  D  V +Q+  T  +   E  L
Sbjct:  111 LPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTET-------EVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAKDQRFVERLVKKRKMKIQRELEAAEFVKKLKLLQDQETQKNLLDVEREFMAMAATEHNPEPDILVNNQSGNTRCQLNSEDLL 316          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 84/234 (35.90%), Postives = 123/234 (52.56%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSME---NLQETISVAPVGLDCGPVVDYTVQDQNELTSMETEIETFL---SSPVDNESSSDIDNPNAGS 682
            LPKYFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+ GQ+H LK I RR+ + S S   +G     +  +   + E+ERLK D   L +E+      +     ++ A+E++L   E +Q+ +++++ + +K P F    VQ   H R        +KRRL    S     N QE   + P  L   P   +  +  +++ S    +E FL   S    N+ S D   P   S
Sbjct:   52 LPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHR--------KKRRLPIPISFHEDANTQEN-QIMPCDLTNSPAQTFYRESFDKMESSLNSLENFLREASEEFGNDISYDDGVPGPSS 276          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 72/162 (44.44%), Postives = 96/162 (59.26%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLT 487
            LP YFKH+NFSSF+RQLNTYGFRKVDPDRWEFANE FL GQKHLL  I RR+H                G YG D E   + R       EI RL++ Q++   ++  M  R+ +TEK+ +QMM FL K +++P    +++      ++   V   +KRR+T
Sbjct:   57 LPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHAR--------------GMYGQDLEDGEIVR-------EIERLKEEQRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERTKQQQQVSDKKKRRVT 197          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 397
            LPKYFKH+NFSSFIRQLNTYGFRK+DP+RWEFANE F+ G  HLLK I RR+ V S S+Q +      E  +  L+ E+ RLK ++++L+A++ R  Q Q     Q+ AME RL++ E++Q+ ++  L + L+
Sbjct:   60 LPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQ 192          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELER--LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLV 424
            LP +FKHSNFSSF+RQLNTYGFRKVDPDRWEFA+  FL GQ HLL+ I RR     S    G +   E G  G  GE     +  +  V+  E+ RLR+ Q++   +++AM  R+  TE++ +QM+ FL K + +P   ++LV
Sbjct:   54 LPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRR-----SSGGGGAKRKEEAGGCGGGGEAAAGDVDEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDPQVLRRLV 191          
The following BLAST results are available for this feature:
BLAST of CB417311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HFA7B_ARATH1.229e-3545.76Heat stress transcription factor A-7b OS=Arabidops... [more]
HSFA3_ORYSJ2.097e-3549.37Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSFA8_ARATH7.968e-3551.39Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HSFA5_ORYSJ1.963e-3345.40Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSFA3_ARATH2.563e-3340.57Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HSFA9_ARATH7.458e-3338.03Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFA4B_ORYSJ3.701e-3235.90Heat stress transcription factor A-4b OS=Oryza sat... [more]
HSFC1_ARATH5.345e-3144.44Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HFA4D_ORYSJ7.718e-3049.62Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFC2A_ORYSJ1.043e-2646.15Heat stress transcription factor C-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionEST0387 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P032 similar to heat shock transcription factor (acc# CAA09300), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417311 ID=CB417311; Name=CB417311; organism=Citrus sinensis; type=EST; length=683bp
GCTTCCGAAATATTTCAAGCACAGTAATTTTTCTAGCTTCATTCGCCAGC
TCAACACTTATGGTTTTAGAAAGGTTGATCCTGATAGATGGGAATTTGCC
AATGAAGGATTTTTGGGAGGGCAGAAGCATCTACTGAAAACAATCAAGAG
AAGGCGACACGTCTCACAGAGTATGCAACAGCGAGGAGGAGAAGCTTGTC
TTGAGGTGGGACAATATGGACTGGATGGTGAGCTTGAAAGATTAAAGAGG
GACCGAAATGTGTTGATGGCAGAAATTGTTAGGCTGAGGCAACATCAGCA
GCAATCAAGAGATCAACTCAGTGCAATGGAGGATAGGTTATTAAGCACAG
AAAAGAAGCAGCAGCAGATGATGACATTCCTTGCAAAAGCACTCAAAAAC
CCATCGTTTTTCCAGCAATTAGTTCAGAGTAATGCACACAGAAGAGAACT
GGGAGGTGTTCAAACTGGGAGAAAGCGGAGACTAACGGCCACACCAAGCA
TGGAGAACTTACAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTGT
GGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCAT
GGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCAA
GCAGTGATATCGACAACCCAAATGCTGGTTCAG
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