CB417311

Overview
NameCB417311
Unique NameCB417311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:278..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 76/184 (41.30%), Postives = 93/184 (50.54%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEAC------------LEVGQYGLDGELERLKRD----RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRELGGVQTGRKRRLTATPSME 505
            LP +FKH NFSSF+RQLNTYGFRKV PDRWEFA+E FL GQ HLL  I RR+   +     GG +C                  G+ GE E    D       L  E+ RLR  Q    ++L+ M  RL +TE++  Q+M+FLAK   +P         NA    L      RKRR    PS E
Sbjct:   66 LPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAKLADDP---------NAVTGHLLEQAAERKRRRQHLPSHE 240          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 55/136 (40.44%), Postives = 88/136 (64.71%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSF 409
            LP YFKH+NFSSFIRQLNTYGFRK+DP+RWEF N+ F+  QKHLLK I RR+ +             E  +  L  ++++L R++  + A++++ +Q +  ++ Q   M + +   E +Q++++ FL  A++NP+F
Sbjct:   63 LPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQE--RAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTF 196          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGG-----EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLV 424
            LP +FKH+NFSSF+RQLNTYGFRKVDPDRWEFA+  FL GQ HLL+ I RR   +      GG     +A  + G  G D        D  ++  E+VRL+Q Q+   D+++AM  R+  TE++ +QM+ FL K + +     +LV
Sbjct:   51 LPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGD-------EDMTMVATEVVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVVGDRDKLHRLV 189          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.356e-25
Identity = 55/150 (36.67%), Postives = 92/150 (61.33%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRR 445
            LP++FKH NFSSFIRQLNTYGFRKVDP++WEF N+ F+ G+ +L+K I RR+  H    +  +      E  +  ++ ++ERLK ++  L+AE+    Q +++   Q++ ++DRL   E+ Q+ ++ ++++ L  P     L      +R
Sbjct:   53 LPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNPLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQVLGKPGLSLNLENHERRKR 202          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 56/137 (40.88%), Postives = 93/137 (67.88%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQ--QRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 403
            LP++FKH+NFSSFIRQLNTYGFRK DP++WEFAN+ F+ GQ HL+K I RR+ V S S+   Q       +  +  ++ ++ERL +++  L+ E+ +  + ++    Q+  +++RL   EK+Q+ M++F+++ L+ P
Sbjct:   55 LPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEKP 191          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEA--CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 403
            LP YFKH NF+SF+RQLNTYGFRKVDPDRWEFA+E FL GQ  LL  I R++       ++GG A  C E+ + G        +  R  + A + RLR+ Q+   ++L AM+ RL + E +  QMM FLAK    P
Sbjct:   64 LPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK-------KKGGAAPGCRELCEEG--------EEVRGTIEA-VQRLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEP 183          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS 172
            LPKYFKH+NFSSF+RQLNTYGFRK+ PD+WEFANE F  GQK LL  I+RR+ V+ +
Sbjct:   49 LPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTST 105          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQ 181
            LP YFKH+NFSSF+RQLNTYGFRK+ PDRWEFANE F  G+KHLL  I RR+      QQ
Sbjct:   74 LPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQ 133          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQ 181
            LP YFKH+NFSSF+RQLNTYGFRK+  DRWEFANE F  G KHLL  I RR+  S S  Q
Sbjct:   76 LPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQPQ 135          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEV 208
            LPKYFKH+NFSSF+RQLNTYGFRKV PDRWEF+N+ F  G+K LL+ I+RR+    +M      A   V
Sbjct:   99 LPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAV 167          
The following BLAST results are available for this feature:
BLAST of CB417311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HFC1A_ORYSJ1.043e-2641.30Heat stress transcription factor C-1a OS=Oryza sat... [more]
HSFA5_ARATH1.779e-2640.44Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HFC2B_ORYSJ1.153e-2544.52Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFA4C_ARATH3.356e-2536.67Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA4A_ARATH9.763e-2540.88Heat stress transcription factor A-4a OS=Arabidops... [more]
HFC1B_ORYSJ2.841e-2447.06Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSF24_SOLPE5.189e-1870.18Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HSFB4_ARATH4.393e-1768.33Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4D_ORYSJ1.278e-1668.33Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFB2B_ARATH1.278e-1659.42Heat stress transcription factor B-2b OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0387 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P032 similar to heat shock transcription factor (acc# CAA09300), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417311 ID=CB417311; Name=CB417311; organism=Citrus sinensis; type=EST; length=683bp
GCTTCCGAAATATTTCAAGCACAGTAATTTTTCTAGCTTCATTCGCCAGC
TCAACACTTATGGTTTTAGAAAGGTTGATCCTGATAGATGGGAATTTGCC
AATGAAGGATTTTTGGGAGGGCAGAAGCATCTACTGAAAACAATCAAGAG
AAGGCGACACGTCTCACAGAGTATGCAACAGCGAGGAGGAGAAGCTTGTC
TTGAGGTGGGACAATATGGACTGGATGGTGAGCTTGAAAGATTAAAGAGG
GACCGAAATGTGTTGATGGCAGAAATTGTTAGGCTGAGGCAACATCAGCA
GCAATCAAGAGATCAACTCAGTGCAATGGAGGATAGGTTATTAAGCACAG
AAAAGAAGCAGCAGCAGATGATGACATTCCTTGCAAAAGCACTCAAAAAC
CCATCGTTTTTCCAGCAATTAGTTCAGAGTAATGCACACAGAAGAGAACT
GGGAGGTGTTCAAACTGGGAGAAAGCGGAGACTAACGGCCACACCAAGCA
TGGAGAACTTACAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTGT
GGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCAT
GGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCAA
GCAGTGATATCGACAACCCAAATGCTGGTTCAG
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