CB417311

Overview
NameCB417311
Unique NameCB417311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:278..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVS 166
            LPKYFKH+NFSSF+RQLNTYGFRK+ PDRWEFAN+ F  G+K LL  I RR+ V+
Sbjct:   78 LPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVA 132          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 52/130 (40.00%), Postives = 68/130 (52.31%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------------SQSMQQRGG-----------------EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQ 304
            LP+YFKH+NFSSFIRQLNTYGFRK  PD+WEFAN+ F  G + LL  I+RR+ V            S S    GG                    +E     L GE E+LKR+ N L +E+   ++ + +
Sbjct:   54 LPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSELAAAKKQRDE 183          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS 172
            LP YFKH+NFSSF+RQLNTYGFRKV P+RWEFANE F  G+K LL  I RR+  S S
Sbjct:   65 LPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSAS 121          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR-------------------HVSQSMQQRGGE-----------ACLEVGQYGLDGELE----RLKRDRNVLMAEIVRLRQ 292
            LPK+FKHSNFSSF+RQLNTYGF+KV  DRWEFAN+ F  G+KHLL  I+RR+                    +S      GGE           A +  G  G   ELE    RL+R+   L  E+ R R+
Sbjct:   50 LPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSGTGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARLRRENARLARELARARR 180          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 157
            LP YFKHSNFSSF+RQLNTYGFRKV P+RWEFANE F  G+K LL  I RR+
Sbjct:   70 LPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 157
            LP YFKH+NFSSF+RQLNTYGFRK+  DRWEFANE F  G KHLL  I RR+
Sbjct:   74 LPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRK 125          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 157
            LPKYFKH+NFSSF+RQLNTYGFRK+ PDRWEFAN+ F  G++ LL  I RR+
Sbjct:   88 LPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 157
            LPK+FKH+NFSSF+RQLNTYGF+KV PDRWEF+N+ F  G+K LL+ I+RR+
Sbjct:   63 LPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRK 114          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 59/180 (32.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR------------------------------HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED-RLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAHRRE 448
            LP +FKH NFSSF+RQLNTYGFRKV PDRWEFAN  F  G++ LL  I+RR+                                + S   R   +     +  +  E E+L++D   L  E+ R R+H ++    LS   D R L      Q+ M   A  +      +Q VQ +A   +
Sbjct:   70 LPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDRSSSSASSPPRADITSENEQLRKDNQTLTMELARARRHCEELLGFLSRFLDVRQLDLRLLMQEDMRAAAGGVGG----EQRVQEHAREEK 245          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 46/139 (33.09%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 385
            LPKYFKHSNF+SF+RQLN YG+ KV           +  RWEF NE F  G+++LL+ I R++  +  +   GG    EV  + L  ELE +K ++  +  ++ R+ +  +    +     +R  S ++  ++++ FL+
Sbjct:  236 LPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQKSNTNIL---GGTTNAEVDIHILLNELETVKYNQLAIAEDLKRITKDNEMLWKENMMARERHQSQQQVLEKLLRFLS 371          
The following BLAST results are available for this feature:
BLAST of CB417311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HFB2C_ORYSJ2.180e-1670.91Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSFB1_ARATH2.847e-1640.00Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HFB4C_ORYSJ3.719e-1670.18Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB2A_ORYSJ3.719e-1641.98Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFB4A_ORYSJ6.343e-1675.00Putative heat stress transcription factor B-4a OS=... [more]
HFB4B_ORYSJ8.284e-1673.08Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2B_ORYSJ8.284e-1671.15Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2A_ARATH8.284e-1669.23Heat stress transcription factor B-2a OS=Arabidops... [more]
HSFB1_ORYSJ1.082e-1532.78Heat stress transcription factor B-1 OS=Oryza sati... [more]
HSF_KLULA5.937e-1433.09Heat shock factor protein OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionEST0387 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P032 similar to heat shock transcription factor (acc# CAA09300), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417311 ID=CB417311; Name=CB417311; organism=Citrus sinensis; type=EST; length=683bp
GCTTCCGAAATATTTCAAGCACAGTAATTTTTCTAGCTTCATTCGCCAGC
TCAACACTTATGGTTTTAGAAAGGTTGATCCTGATAGATGGGAATTTGCC
AATGAAGGATTTTTGGGAGGGCAGAAGCATCTACTGAAAACAATCAAGAG
AAGGCGACACGTCTCACAGAGTATGCAACAGCGAGGAGGAGAAGCTTGTC
TTGAGGTGGGACAATATGGACTGGATGGTGAGCTTGAAAGATTAAAGAGG
GACCGAAATGTGTTGATGGCAGAAATTGTTAGGCTGAGGCAACATCAGCA
GCAATCAAGAGATCAACTCAGTGCAATGGAGGATAGGTTATTAAGCACAG
AAAAGAAGCAGCAGCAGATGATGACATTCCTTGCAAAAGCACTCAAAAAC
CCATCGTTTTTCCAGCAATTAGTTCAGAGTAATGCACACAGAAGAGAACT
GGGAGGTGTTCAAACTGGGAGAAAGCGGAGACTAACGGCCACACCAAGCA
TGGAGAACTTACAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTGT
GGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCAT
GGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCAA
GCAGTGATATCGACAACCCAAATGCTGGTTCAG
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