CB417311

Overview
NameCB417311
Unique NameCB417311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12212 contig Csv1_Contig12212:278..960. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR 157
            LP  FKH NFSSF+RQLNTYGFRKV   RWEF+NE F  GQ+ L+  I+RR+
Sbjct:   80 LPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRK 131          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEA-------------CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM---------EDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAH 439
            LPKYFKH+N +SF+RQLN YGFRKV           + D  EF +  F+ GQ+HLL+ IKR+     S++    +               ++  Q  +D +L  +K +   L  E+  LRQ   Q +  ++ +          +R+L  ++K   M+   + A   P + +Q    + H
Sbjct:   62 LPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRKVTSVSSIKNEDIKVRQDNVTKLLTDIQVMKGKQESMDSKLIAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLNDSSSAHSMPKYSRQYSLEHVH 240          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 51/172 (29.65%), Postives = 80/172 (46.51%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS--------MQQRGGEACLEV-----GQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM---------EDRLLSTEKKQQQMMTFLAKALKNPSFFQQ 418
            LPKYFKH+N +SF+RQLN YGFRKV           + D  EF +  F+ GQ+ LL+ IKR+ +   +         Q   G+   +V      Q  +DG L  +K +   L  E+  LRQ   Q +  ++ +          +R+L  ++K   M+   +     P + +Q
Sbjct:   54 LPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRKVNTMSATKSDEVKVRQDSVGKLISDVQSMKGKQESIDGRLLSMKHENEALWREVASLRQKHTQQQKVVNKLIQFLVSLVQSNRILGVKRKIPLMLNDSSTGHSPPKYSRQ 225          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRR---------RHVSQSMQQRGGEA-CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQ-HQQQSR 310
            LP+YFKHSN +SF+RQLN YGFRKV           + D  EF +  F+ G++ LL+ ++R+         R   + + +  GE   L   Q   +  L+ L++   +L  E+V LRQ H QQ R
Sbjct:   59 LPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDSRWRPEDLSRLLGEVQALRGVQESTEARLQELRQQNEILWREVVTLRQSHSQQHR 183          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 51/186 (27.42%), Postives = 81/186 (43.55%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRR--------------------RHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM---------EDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAH 439
            LPKYFKH+N +SF+RQLN YGFRKV           + D  EF +  FL GQ+ LL+ IKR+                    + ++     +G + C       +D +L  +K +   L  E+  LRQ   Q +  ++ +          +R+L  ++K   M+     A   P + +Q    + H
Sbjct:   57 LPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTKLLTDVQLMKGKQEC-------MDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLNDSGSAHSMPKYSRQFSLEHVH 235          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 52/186 (27.96%), Postives = 82/186 (44.09%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRR--------------------RHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM---------EDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAH 439
            LPKYFKH+N +SF+RQLN YGFRKV           + D  EF +  FL GQ+ LL+ IKR+                    R ++     +G + C       +D +L  +K +   L  E+  LRQ   Q +  ++ +          +R+L  ++K   M++    A   P + +Q    + H
Sbjct:   57 LPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTRLLTDVQLMKGKQEC-------MDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLSDSNSAHSVPKYGRQYSLEHVH 235          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 51/179 (28.49%), Postives = 80/179 (44.69%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG-------------GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM---------EDRLLSTEKKQQQMMTFLAKALKNPSFFQQLVQSNAH 439
            LPKYFKHSN +SF+RQLN YGFRKV           + D  EF +  FL GQ+ LL+ IKR+     +++                    ++  Q  +D +L  +K +   L  E+  LRQ   Q +  ++ +          +R+L  ++K   M+     A   P + +Q    + H
Sbjct:   57 LPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLRSEDIKIRQDSVTKLLTDVQLMKGKQESMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLVQSNRILGVKRKIPLMLNDGGPAHPMPKYGRQYSLEHIH 235          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRR---------RHVSQSMQQRGGEA-CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQ-HQQQSR 310
            LP+YFKHSN +SF+RQLN YGFRKV           + D  EF +  F+ G++ LL+ ++R+         R   + + +  GE   L   Q   +  L  L++   +L  E+V LRQ H QQ R
Sbjct:   60 LPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHR 184          
BLAST of CB417311 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 2
Query:    2 LPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQR----------GGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQ-HQQQSR 310
            LP+YFKHSN +SF+RQLN YGFRKV           + D  EF +  F+ G++ LL+ ++R+    +S   R          G    L   Q   +  L  L++   +L  E+V LRQ H QQ R
Sbjct:   59 LPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRSDDGRWRPEDLGRLLGEVQALRGVQEITEARLRELRQQNEILWREVVTLRQSHGQQHR 183          
The following BLAST results are available for this feature:
BLAST of CB417311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HSFB3_ARATH2.947e-1365.38Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSF1_CHICK5.026e-1328.49Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF_XENLA5.557e-1229.65Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF4_MOUSE1.238e-1136.00Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN1.238e-1127.42Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF1_MOUSE1.617e-1127.96Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_BOVIN2.112e-1128.49Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF4_HUMAN6.144e-1136.00Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA8.024e-1136.00Heat shock factor protein 4 OS=Canis familiaris GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0387 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P032 similar to heat shock transcription factor (acc# CAA09300), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417311 ID=CB417311; Name=CB417311; organism=Citrus sinensis; type=EST; length=683bp
GCTTCCGAAATATTTCAAGCACAGTAATTTTTCTAGCTTCATTCGCCAGC
TCAACACTTATGGTTTTAGAAAGGTTGATCCTGATAGATGGGAATTTGCC
AATGAAGGATTTTTGGGAGGGCAGAAGCATCTACTGAAAACAATCAAGAG
AAGGCGACACGTCTCACAGAGTATGCAACAGCGAGGAGGAGAAGCTTGTC
TTGAGGTGGGACAATATGGACTGGATGGTGAGCTTGAAAGATTAAAGAGG
GACCGAAATGTGTTGATGGCAGAAATTGTTAGGCTGAGGCAACATCAGCA
GCAATCAAGAGATCAACTCAGTGCAATGGAGGATAGGTTATTAAGCACAG
AAAAGAAGCAGCAGCAGATGATGACATTCCTTGCAAAAGCACTCAAAAAC
CCATCGTTTTTCCAGCAATTAGTTCAGAGTAATGCACACAGAAGAGAACT
GGGAGGTGTTCAAACTGGGAGAAAGCGGAGACTAACGGCCACACCAAGCA
TGGAGAACTTACAAGAAACAATTTCCGTGGCACCTGTGGGTCTGGATTGT
GGTCCGGTTGTAGATTACACAGTCCAAGATCAAAATGAATTGACCTCCAT
GGAAACTGAGATAGAGACGTTTCTTTCTTCGCCGGTGGACAACGAATCAA
GCAGTGATATCGACAACCCAAATGCTGGTTCAG
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