CF417071

Overview
NameCF417071
Unique NameCF417071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417071_ssr538 microsatellite CF417071_ssr538:538..553. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:381..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 80/141 (56.74%), Postives = 109/141 (77.30%), Query Frame = 2
Query:   17 NNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY-SGAQFR 433
            +NAGGWCNPP+ HFD+++P F  +A +RAG++PVAYRRVPC R GG+RF   G+SY+ L+ + NVGGAGD+ ++++KGSRT W  MS NWG ++Q+ + L GQSLSF VT+ + G T+ ++NVAPA WS G+TY S A FR
Sbjct:  122 SNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANFR 262          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   32 WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421
            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +KG++TGW  M +NWGQNW + T L GQ LSF VTTSDG T   +NV P  W FG+T+ G
Sbjct:  140 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.565e-43
Identity = 80/143 (55.94%), Postives = 103/143 (72.03%), Query Frame = 2
Query:    2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 430
            N+ L ++ GGWCN P++H +LS   F  IA+ RA ++P+ YRRV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSFEVT   G+T+ SY+VAP  W FG TY G QF
Sbjct:  112 NSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.375e-43
Identity = 75/130 (57.69%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   32 WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421
            WCNPPQ+HFDLS  +F  IA+Y+AGVVPV YRR+PC + GG++F   G+ YF +VLI NVGGAGD+  V +K ++TGW  M +NWGQNW ++T L GQ LSF VTT+DG T   +NV P  W FG+T+ G
Sbjct:  146 WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 80/143 (55.94%), Postives = 101/143 (70.63%), Query Frame = 2
Query:    2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 430
            N  L ++ GGWCN P++HF++S+  F  +A+ +A +VPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRTGW PM RNWGQNWQ +  L GQ LSFEVT   GRTV +Y+VAP  W F +T+ G QF
Sbjct:  116 NLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 80/143 (55.94%), Postives = 100/143 (69.93%), Query Frame = 2
Query:    2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 430
            N     + GG CNPP +HF L    F+ IA ++AG +PV YRR+ C + G +RFT++G   F  VLITNV G+GD+ AV IKGSRTGW PM RNWGQNW  N  L  Q+LSFEVT+SD  TVTSYNV+P  W++G+T+ G QF
Sbjct:  121 NYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 75/132 (56.82%), Postives = 93/132 (70.45%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421
            G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:  141 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 75/132 (56.82%), Postives = 93/132 (70.45%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421
            G WCNPPQ+HFDLS P+F  IAQY+AGVVPV YRR+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF VTTSDG T    NV P  W FG+T+ G
Sbjct:  134 GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 73/139 (52.52%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418
            N AL +N GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G + +V +KG  T   P+SRNWG NWQS+  L GQ+L+F VT++ G+T+   N+ PA W FG+++S
Sbjct:  115 NYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 74/134 (55.22%), Postives = 100/134 (74.63%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQ 427
            GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS TGW  MSRNWG NWQ    L GQ+LSF VT++ G+T+   +V PAGWSFG+T+S  Q
Sbjct:  112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
The following BLAST results are available for this feature:
BLAST of CF417071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXPA7_ARATH5.167e-4456.74Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP22_ARATH6.749e-4459.23Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP20_ARATH2.565e-4355.94Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP26_ARATH4.375e-4357.69Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP16_ORYSJ5.713e-4355.94Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH5.713e-4355.94Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP25_ARATH1.273e-4256.82Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.273e-4256.82Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP15_ORYSJ2.171e-4252.52Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ1.077e-4155.22Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-001 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417071 ID=CF417071; Name=CF417071; organism=Citrus sinensis; type=EST; length=662bp
GAACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGC
AACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGA
GCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGG
AGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGA
TCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGA
TCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCA
AAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAA
GCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCC
TTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCA
TTAGNAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAA
GTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATAT
ATATNAATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAA
AAATGAAAAAAAAGGGCTTATTTTAAAATGGCTTATTTTTTTCATTTTCA
TTGATTTTTATG
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