CF417071

Overview
NameCF417071
Unique NameCF417071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417071_ssr538 microsatellite CF417071_ssr538:538..553. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:381..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.838e-41
Identity = 71/131 (54.20%), Postives = 99/131 (75.57%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418
            GGWCN  + HFD+SQP +++I  Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PAGWSFG+T+S
Sbjct:  112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40
Identity = 71/133 (53.38%), Postives = 99/133 (74.44%), Query Frame = 2
Query:   20 NAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS 418
            N GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PAGWSFG+T+S
Sbjct:  101 NYGGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 2
Query:    2 NNALPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGR-TVTSYNVAPAGWSFGRTY 415
            N    +N GGWCNPP+ HFDL++P F  IA ++AG++PV+YRRV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS NWG ++Q+ + L GQSLSF +T+   R T+ +YN APA WS G+TY
Sbjct:  112 NYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 2
Query:   17 NNAGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYS--GAQF 430
            NN  GWCN P+ HFD+S P F  IA+    G+VPV YRRV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RNWG NWQS+  L GQ LSF+VT +D +T T  NV P+ W FG+T+S  G QF
Sbjct:  110 NNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.103e-37
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 2
Query:   14 PNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSF-GRTYSG 421
            PN+   WCNPPQ+HFDLSQP+F  IA+Y+AGVVPV +RRVPC + GG++F I G+ +F ++L  NVGGAG V A+ IKG+RT W  M +NWGQ W +   L GQ LSF +TTSDG      +V P  W   G+++ G
Sbjct:  174 PND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 2
Query:   32 WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSG 421
            WC  P +HFDLS P+F  IAQ +A +VPV YRRVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTSDG T    +V PA W FG+T+ G
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTT-SDGRTVTSYNVAPAGWSFGRTY 415
            GGWCNPP+ HFDLS+P F  +A +RAG+VPV YRRVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+   L GQ+LSF+VT+ + G+T+ +  V PA W FG TY
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 2
Query:   50 QHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415
            +HFDL+ P F  IA+ + GVVPV+YR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++   L G+SL+F V T D R  TS+ VAP  W++  TY
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.192e-28
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 2
Query:   11 LPNNAGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFEVTT--SDGRTVTSYNVAPAGWSFGRTYSGA 424
            LPN+ GGWCNPP+ HFD++ P F  +AQ  AG+VPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + NWG  +Q    L N   L+ ++TT  +  +T+   +     W  G  Y G+
Sbjct:  138 LPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280          
BLAST of CF417071 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 46/144 (31.94%), Postives = 70/144 (48.61%), Query Frame = 2
Query:   26 GGWCNPPQQHFDLSQPVFQHIAQY-------RAGVVPVAYRRVPCGRRGGIRFTINGHS--YFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYLN---GQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTY 415
            GG C     HFD+S   F  +A          AGV+ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R G  W+ M ++WG  W+ N+          S  +T+  G+ + + NV P+GW  G TY
Sbjct:  124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
The following BLAST results are available for this feature:
BLAST of CF417071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP19_ORYSJ1.838e-4154.20Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ2.032e-4053.38Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH4.527e-4053.24Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP12_ARATH8.537e-3954.23Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP24_ARATH2.103e-3753.28Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP21_ARATH3.587e-3755.38Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP30_ORYSJ2.325e-3653.03Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP26_ORYSJ2.660e-3249.59Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ5.192e-2844.06Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ3.267e-1431.94Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-001 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417071 ID=CF417071; Name=CF417071; organism=Citrus sinensis; type=EST; length=662bp
GAACAACGCCCTTCCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGC
AACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGA
GCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTACCCTGCGGAAGAAGGGG
AGGCATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGA
TCACCAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGA
TCTAGAACTGGCTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCA
AAGCAACACTTATCTCAATGGCCAAAGCCTGTCATTTGAGGTCACCACAA
GCGATGGCCGTACTGTGACTTCCTACAATGTTGCCCCTGCTGGCTGGTCC
TTTGGCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCA
TTAGNAGATTGGGTTTTAACACCTTTTTTAGCTATATATTCGTGTACTAA
GTAGTATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATAT
ATATNAATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAA
AAATGAAAAAAAAGGGCTTATTTTAAAATGGCTTATTTTTTTCATTTTCA
TTGATTTTTATG
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