CF417077

Overview
NameCF417077
Unique NameCF417077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:6..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.814e-61
Identity = 110/128 (85.94%), Postives = 116/128 (90.62%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKAPRNLCS 431
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRI+DVG KK+ VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM K+AGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGM G F K P+  C+
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGK-PQGTCA 127          

HSP 2 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWCECXAFSGCHGPLAQRPPGRAFLE 702
            RGAFGKPQGTCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+ +   +  P         GC GPL+ R PG+AFL+
Sbjct:  116 RGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVN-PKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.979e-60
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRP RCYR +  K YPKSRF RGVPD KI+I+D+G +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGM G F K
Sbjct:    1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGK 121          

HSP 2 Score: 71.2478 bits (173), Expect = 1.979e-60
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFT 570
            RG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT
Sbjct:  116 RGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFT 174          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.144e-50
Identity = 93/121 (76.86%), Postives = 102/121 (84.30%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+  VD FP CVH++S E+E++SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGM G + K
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGK 121          

HSP 2 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  343 LTRCFRVLGLIGS-RLE--WRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADY 591
            +TR  ++L   G+ RL+   RGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY
Sbjct:   96 VTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDY 181          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.969e-48
Identity = 95/128 (74.22%), Postives = 101/128 (78.91%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKAPRNLCS 431
            M RRPARCYR  KNKPYPKSR+ R VPD KIRIYD+G KK  VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GM G  W  P  L +
Sbjct:    1 MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGA-WGKPHGLAA 127          

HSP 2 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEV-EVGE 612
            RGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+  E GE
Sbjct:  116 RGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGE 189          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 87/121 (71.90%), Postives = 97/121 (80.17%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MGRRPA+CYR  KNK YPKSR+CRGVP+ KIRIYD GM+K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GM G F K
Sbjct:    1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGK 121          

HSP 2 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  325 PSMFCALTRCFRVLGLIGSRLEWRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLE 597
            P   C + +     G    +   RGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++
Sbjct:   93 PFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVK 183          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 76/103 (73.79%), Postives = 81/103 (78.64%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLEVEVGEQDCPXWCECXAFSGCHGPLAQRPPGRAFLE 702
            RGAFGKPQG CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL+ +   +  P         GCHG LA R PGRAFLE
Sbjct:   45 RGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLL-GCHGRLAARQPGRAFLE 146          

HSP 2 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 3
Query:  261 CNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKAPRNLCS 431
            C    A  AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM G F K P+ +C+
Sbjct:    1 CGGCEAGSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK-PQGVCA 56          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.038e-33
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPAR YR+ K   Y +  + +GVPDPKI+ +D+G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GM   F K
Sbjct:    1 MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGK 118          

HSP 2 Score: 53.5286 bits (127), Expect = 8.038e-33
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:  113 RLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.711e-30
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPARCY      PY +  +  GVP PKI  +++G ++  ++++     LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GM   F K
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIHGVPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGK 120          

HSP 2 Score: 47.3654 bits (111), Expect = 7.711e-30
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549
            R AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:  115 RQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.371e-29
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPARCY      PY +  +  GVP PKI  +++G       ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GM   F K
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGK 118          

HSP 2 Score: 49.6766 bits (117), Expect = 6.371e-29
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 546
            R AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:  113 RQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.100e-28
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNK-----PYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M ++PARCY + ++K     PY +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GM   F K
Sbjct:    1 MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGK 123          

HSP 2 Score: 50.8322 bits (120), Expect = 3.100e-28
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 546
            R AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:  118 RQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
The following BLAST results are available for this feature:
BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_PINTA6.814e-6185.9460S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_ENCCU1.979e-6071.9060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_CAEEL4.144e-5076.8660S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_YEAST2.969e-4874.2260S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR9.552e-4771.9060S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_TOBAC7.650e-3673.7960S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_METKA8.038e-3345.4550S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE7.711e-3044.6350S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF6.371e-2942.1550S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_HYPBU3.100e-2840.4850S ribosomal protein L10e OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-007 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bp
GCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATG
GGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCC
AAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACG
ATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCAC
CTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGC
CCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTT
TCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAG
ATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGGAGGGGTG
CTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTC
TTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGC
CCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCA
GCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTNGAGGTG
GAAGTCGGAGAACAGGATTGTCCCNGATGGTGTGAATGCCNAGCNTTCTC
NGGATGTCATGGTCCTTTGGCTCAACGCCCACCTGGAAGAGCTTTCCTGG
AAG
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