CF417077 | Citrus Genome Database

Overview


Name	CF417077
Unique Name	CF417077
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	703

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig242	contig	Csv1_Contig242:6..704.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.161e-27
Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GM   F K
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGK 117

HSP 2 Score: 47.7506 bits (112), Expect = 1.161e-27
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P   KI+V +
Sbjct:  112 RAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEK 165

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.343e-27
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GM   F KA
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKA 119

HSP 2 Score: 47.3654 bits (111), Expect = 4.343e-27
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FGK  GT ARV  GQ ++++     N  HA+EALRR   K P + KI++ +
Sbjct:  113 RLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKIVIGK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.576e-27
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3

Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GM   F K
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGK 119

HSP 2 Score: 45.0542 bits (105), Expect = 9.576e-27
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFGKP GT ARV  GQ +L+V         A+EALRRA  K P   +I++ +
Sbjct:  114 RLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQ 167

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.742e-25
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            M  RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GM   F KA
Sbjct:    1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA 119

HSP 2 Score: 41.9726 bits (97), Expect = 1.742e-25
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:  113 RLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.507e-25
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GM   F KA
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA 119

HSP 2 Score: 41.9726 bits (97), Expect = 6.507e-25
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:  113 RLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.507e-25
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGADR+  GM   F KA
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA 119

HSP 2 Score: 41.9726 bits (97), Expect = 6.507e-25
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:  113 RLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.464e-25
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +K+   +FP  + L++ E   V   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GM   F
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAF 116

HSP 2 Score: 43.1282 bits (100), Expect = 8.464e-25
Identity = 19/54 (35.19%), Postives = 34/54 (62.96%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFG+P GT ARV    V++  R  ++++H  + AL++A  K P   K+++++
Sbjct:  113 RAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCKVVITK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.434e-24
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GM   F
Sbjct:    1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAF 116

HSP 2 Score: 42.3578 bits (98), Expect = 1.434e-24
Identity = 19/54 (35.19%), Postives = 33/54 (61.11%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFG+P GT ARV    V++  R  ++++   + ALR+A  K P   K+++++
Sbjct:  113 RAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKVVITK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-24
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GM   F KA
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA 119

HSP 2 Score: 41.9726 bits (97), Expect = 1.435e-24
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:  113 RLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166

[Close]

BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.119e-24
Identity = 49/119 (41.18%), Postives = 62/119 (52.10%), Query Frame = 3

Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR     PY +  + +  P   I  +D+G  K     F   + LV      + + ALEAAR   NKY+    G+  F LRV V P H+LR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSF 116

HSP 2 Score: 47.7506 bits (112), Expect = 4.119e-24
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1

Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R +FG P G  ARV  GQ+++ V+    N  HA+EALRRA  K P   +IIV +
Sbjct:  113 RLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIPLPSRIIVEQ 166

The following BLAST results are available for this feature:

BLAST of CF417077 vs. ExPASy Swiss-Prot

BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
RL10_ARCFU	1.161e-27	38.84	50S ribosomal protein L10e OS=Archaeoglobus fulgid...	[more]
RL10_META3	4.343e-27	44.26	50S ribosomal protein L10e OS=Methanococcus aeolic...	[more]
RL10_METJA	9.576e-27	40.68	50S ribosomal protein L10e OS=Methanocaldococcus j...	[more]
RL10_METMP	1.742e-25	42.62	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_METM7	6.507e-25	40.98	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_METM6	6.507e-25	40.98	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_THEVO	8.464e-25	42.02	50S ribosomal protein L10e OS=Thermoplasma volcani...	[more]
RL10_THEAC	1.434e-24	42.86	50S ribosomal protein L10e OS=Thermoplasma acidoph...	[more]
RL10_METM5	1.435e-24	41.80	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_THEPD	4.119e-24	41.18	50S ribosomal protein L10e OS=Thermofilum pendens ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-007 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bp
GCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATG
GGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCC
AAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACG
ATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCAC
CTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGC
CCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTT
TCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAG
ATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGGAGGGGTG
CTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTC
TTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGC
CCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCA
GCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTNGAGGTG
GAAGTCGGAGAACAGGATTGTCCCNGATGGTGTGAATGCCNAGCNTTCTC
NGGATGTCATGGTCCTTTGGCTCAACGCCCACCTGGAAGAGCTTTCCTGG
AAG