CF417077

Overview
NameCF417077
Unique NameCF417077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:6..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.350e-21
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + LV+ EK  +   ALEAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GM   F K
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTT--FPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGK 119          

HSP 2 Score: 33.4982 bits (75), Expect = 1.350e-21
Identity = 21/52 (40.38%), Postives = 28/52 (53.85%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549
            R AFGK  GT ARV   Q L +V  +  N   A++AL  A  K P   +I++
Sbjct:  114 RRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.967e-21
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GM   F K
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118          

HSP 2 Score: 36.5798 bits (83), Expect = 2.967e-21
Identity = 20/45 (44.44%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528
            R  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:  113 RRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.860e-21
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPA+  R +    Y +  + RG P P+I I+D+G       +F F V L + E   +   ALEAAR   N+Y++K  G+  FH ++RV+PF VLR N M +   ADR   GM   F K
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118          

HSP 2 Score: 36.5798 bits (83), Expect = 3.860e-21
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528
            R  FGKP G  AR+   Q +L+VR    +   A  A++RA  KFP
Sbjct:  113 RRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.863e-21
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  +PA  YR I    Y +  +  G+P  KI  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GM   F K
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGK 122          

HSP 2 Score: 41.9726 bits (97), Expect = 3.863e-21
Identity = 23/54 (42.59%), Postives = 29/54 (53.70%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:  117 RAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.533e-21
Identity = 47/121 (38.84%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GM   F K
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118          

HSP 2 Score: 36.965 bits (84), Expect = 6.533e-21
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528
            R  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:  113 RRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.546e-21
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GM   F K
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGK 119          

HSP 2 Score: 34.6538 bits (78), Expect = 6.546e-21
Identity = 22/52 (42.31%), Postives = 28/52 (53.85%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549
            R AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:  114 RRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.499e-21
Identity = 47/121 (38.84%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GM   F K
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118          

HSP 2 Score: 36.965 bits (84), Expect = 8.499e-21
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528
            R  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:  113 RRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.438e-20
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GM   F K
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118          

HSP 2 Score: 34.2686 bits (77), Expect = 1.438e-20
Identity = 19/45 (42.22%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528
            R  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:  113 RRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.446e-20
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 3
Query:   90 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKA 413
            +PY +  + R +P  KI  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GM G F KA
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKA 107          

HSP 2 Score: 32.3426 bits (72), Expect = 1.446e-20
Identity = 18/61 (29.51%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 576
            RGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +     +F
Sbjct:  101 RGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 52/117 (44.44%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L+  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGADRLQ GM   F
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAF 120          
The following BLAST results are available for this feature:
BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METMA1.350e-2138.8450S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_THEON2.967e-2138.8450S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_THESM3.860e-2138.8450S ribosomal protein L10e OS=Thermococcus sibiric... [more]
RL10_HALMA3.863e-2133.6150S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_PYRFU6.533e-2138.8450S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METAC6.546e-2136.3650S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_PYRHO8.499e-2138.8450S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_THEGJ1.438e-2038.8450S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_METST1.446e-2042.5950S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_PYRAR1.536e-2044.4450S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-007 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bp
GCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATG
GGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCC
AAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACG
ATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCAC
CTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGC
CCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTT
TCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAG
ATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGGAGGGGTG
CTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTC
TTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGC
CCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCA
GCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTNGAGGTG
GAAGTCGGAGAACAGGATTGTCCCNGATGGTGTGAATGCCNAGCNTTCTC
NGGATGTCATGGTCCTTTGGCTCAACGCCCACCTGGAAGAGCTTTCCTGG
AAG
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