CF417077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.166e-20 Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 MG RPA+ R + Y + + RG P PKI I+D+G EF + V L + + + ALEA RI N+Y+ K G+ +H ++RV+PF VLR N M + ADR GM F K Sbjct: 1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118 HSP 2 Score: 33.113 bits (74), Expect = 3.166e-20 Identity = 19/45 (42.22%), Postives = 23/45 (51.11%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528 R FGKP G ARV Q +L+V + A A+ RAK K P Sbjct: 113 RRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20 Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 M RPARCYR+IK PY + + G P +I +D+G F LV+ E+ + +ALEAAR +KY+ KY G ++LR+ V P HVLR N+ML+ AGADRLQ GM F Sbjct: 1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF 120
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.357e-20 Identity = 46/121 (38.02%), Postives = 63/121 (52.07%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M RPA+ R + Y + + RG P PKI I+D+G +F F V L + + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GM F K Sbjct: 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK 118 HSP 2 Score: 36.5798 bits (83), Expect = 5.357e-20 Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 528 R FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 113 RRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20 Identity = 51/117 (43.59%), Postives = 68/117 (58.12%), Query Frame = 3 Query: 57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 RPARCY++IK PY + + G P +I +D+G FP LV E+ + +ALEAAR KY++KY G ++LR+ P HVLR N+ML+ AGADRLQ GM F Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAF 120
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.954e-20 Identity = 52/117 (44.44%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 RPARCYR+IK PY + + G P +I +D+G+ F LV E+ + +ALEAAR KY++KY G ++LR+ V P HVLR N+ML+ AGADRLQ GM F Sbjct: 4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF 120
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.181e-19 Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M R+P YR ++ + + + ++ GVP ++ YD+G K FP + L+ EK + ALEAARI N+++ + GK +++++RV+P VLR NK + AGADR+ +GM F K Sbjct: 1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGK 119 HSP 2 Score: 31.5722 bits (70), Expect = 1.181e-19 Identity = 20/52 (38.46%), Postives = 28/52 (53.85%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 549 R AFGK GT ARV Q + +V + N A++AL A K P +I++ Sbjct: 114 RRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19 Identity = 51/117 (43.59%), Postives = 68/117 (58.12%), Query Frame = 3 Query: 57 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 RPARCY++IK PY + + G P +I +D+G F LV E+ + +ALEAAR +KY+ KY G ++LR+ V P HVLR N+ML+ AGADRLQ GM F Sbjct: 4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF 120
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.997e-19 Identity = 50/122 (40.98%), Postives = 64/122 (52.46%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410 M RP RCYR Y + + GVP PKI + +G D + + LV+ EK + ALEAAR+ K + G D F L V +P HV+R NKM++ AGADRLQ GM F K Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGVPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGK 119 HSP 2 Score: 33.4982 bits (75), Expect = 1.997e-19 Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 1 Query: 394 RGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543 R +FGKP GT AR+ +G +++ + K + A++A A K P + KI Sbjct: 114 RLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19 Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 M RP RCYR Y + + G+P PKI + G ++ + V L++ E + ALEA R K + K G + +F + + +P HVLR NKM++ AGADRLQ GM F Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117 HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19 Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543 R +FG P GT AR+ +G++L+ V+ K + A+EAL+ A K P R +I Sbjct: 114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19 Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404 M RP RCYR Y + + G+P PKI + G ++ + V L++ E + ALEA R K + K G + +F + + +P HVLR NKM++ AGADRLQ GM F Sbjct: 1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117 HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19 Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1 Query: 394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543 R +FG P GT AR+ +G++L+ V+ K + A+EAL+ A K P R +I Sbjct: 114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164 The following BLAST results are available for this feature:
BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bpback to top |