CF417077

Overview
NameCF417077
Unique NameCF417077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:6..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117          

HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543
            R +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:  114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117          

HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543
            R +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:  114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117          

HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543
            R +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:  114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.426e-19
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117          

HSP 2 Score: 37.7354 bits (86), Expect = 7.426e-19
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543
            R +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:  114 RLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.665e-19
Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GM   F
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAF 119          

HSP 2 Score: 36.5798 bits (83), Expect = 9.665e-19
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:  116 RQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.665e-19
Identity = 38/119 (31.93%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GM   F
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAF 119          

HSP 2 Score: 36.5798 bits (83), Expect = 9.665e-19
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:  116 RQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-18
Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCF 404
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GM   F
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSF 117          

HSP 2 Score: 36.5798 bits (83), Expect = 1.256e-18
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 543
            R +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:  114 RLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.764e-18
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  +PA  YR++    Y +  +  G+P  KI  +++G  + G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GM   F K
Sbjct:    1 MSDKPASMYRKLSKPSYTRRDYVTGIPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGK 121          

HSP 2 Score: 35.8094 bits (81), Expect = 2.764e-18
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA--KFKFPGR------QKIIVS 552
            R AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:  116 RQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWKAPRNLCSC 434
            M R+P   YR +  K Y +  +  G+P  K+  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGADR+  GM   F KA      C
Sbjct:    1 MVRKPNSMYRNLAKKAYTRKEYMGGIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKAVGTAARC 126          
BLAST of CF417077 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.091e-16
Identity = 37/121 (30.58%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   48 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMEGCFWK 410
            M  +PA  YR I    Y +  +  G+P  KI  +++G      D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GM   F K
Sbjct:    1 MSDKPASMYRTIDKPSYTRREYITGIPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGK 121          

HSP 2 Score: 35.039 bits (79), Expect = 1.091e-16
Identity = 20/54 (37.04%), Postives = 27/54 (50.00%), Query Frame = 1
Query:  394 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 555
            R AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:  116 RQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CF417077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_SULIM7.426e-1936.6750S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL7.426e-1936.6750S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK7.426e-1936.6750S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA7.426e-1936.6750S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_HALSA9.665e-1931.9350S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS39.665e-1931.9350S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_SULSO1.256e-1836.6750S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALWD2.764e-1832.2350S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_METHJ1.030e-1637.9850S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_HALLT1.091e-1630.5850S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-007 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417077 ID=CF417077; Name=CF417077; organism=Citrus sinensis; type=EST; length=703bp
GCCGAGCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATG
GGAAGAAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCC
AAAGTCCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACG
ATGTCGGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCAC
CTCGTCAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGC
CCGTATCGCTTGCAACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTT
TCCATTTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAG
ATGCTTTCGTGTGCTGGGGCTGATCGGCTCCAGACTGGAATGGAGGGGTG
CTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTC
TTGCTTTCTGTCCGTTGCAAGGACAGTAACAGCCACCATGCTCAGGAGGC
CCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCA
GCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTNGAGGTG
GAAGTCGGAGAACAGGATTGTCCCNGATGGTGTGAATGCCNAGCNTTCTC
NGGATGTCATGGTCCTTTGGCTCAACGCCCACCTGGAAGAGCTTTCCTGG
AAG
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