CF417087

Overview
NameCF417087
Unique NameCF417087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417087 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 2.780e-11
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:   15 QVTASLXPCIPFLKTGGRFSPPPCCXGVQSLNGADXNXPPXRRAACNCLE 164
            QV+++L PCI ++K GG   PP CC G++++N         RRAACNCL+
Sbjct:    5 QVSSNLAPCINYVKGGGAV-PPACCNGIRNVNNL-ARTTADRRAACNCLK 52          

HSP 2 Score: 40.0466 bits (92), Expect = 2.780e-11
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  163 KRAYGTIRGIKPNVAAGLPSXCGVRIPYXIS 255
            K+  G+I G+ PN AA LP  CGV +PY IS
Sbjct:   52 KQLSGSIPGVNPNNAAALPGKCGVNVPYKIS 82          
BLAST of CF417087 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.559e-11
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 3
Query:   18 VTASLXPCIPFLKTGGRFSPPPCCXGVQSLNGADXNXPPXRRAACNCLETS 170
            V+ +L PC+ +LK GG    P CC GV+ LNGA       RRAACNCL++S
Sbjct:   32 VSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGA-ARTTIDRRAACNCLKSS 80          

HSP 2 Score: 38.891 bits (89), Expect = 3.559e-11
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  163 KRAYGTIRGIKPNVAAGLPSXCGVRIPYXIS 255
            K + G+I G+KP   A LP  CGVR+PY IS
Sbjct:   78 KSSAGSISGLKPGNVATLPGKCGVRLPYTIS 108          
The following BLAST results are available for this feature:
BLAST of CF417087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NLTP1_PRUDO2.780e-1146.00Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_LENCU3.559e-1150.98Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-017 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_B9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417087 ID=CF417087; Name=CF417087; organism=Citrus sinensis; type=EST; length=485bp
CATAACATGCGGCCCAAGTGACAGCCTCCTTGGNTCCATGCATCCCNTTC
TTGAAAACTGGAGGNCGTTTTTCTCCACCGCCATGCTGTANCGGCGTGCA
GTCTCTCAACGGCGCCGACNAGAACCNACCCCCTGANCGCCGAGCTGCAT
GCAACTGCTTGGAAACGAGCTTACGGAACAATCCGCGGCATCAAACCTAA
TGTTGCCGCTGGCCTTCCTAGTCNATGTGGAGTCAGAATTCCTTACNAGA
TCAGCCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGC
TCTGTGACTTTCCNAGTATGATTGACTGAGAAGANTNAATAAATAAAGAA
TATCTATGTTAATTTTCTTTGTCCGAACGAGTCTCCCTTGTATGAGTTCA
CTCTCATGNCATGGNTGTATATTGCTTTTTATGTCATATNAATATGTAAC
GCGATCTGTGTTTGAGTGATAAAAAAAAAAAAAAA
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