CF417202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 4.789e-58 Identity = 117/167 (70.06%), Postives = 121/167 (72.46%), Query Frame = 2 Query: 122 GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 GR+SMRKT SK+VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA W + G G LG + L H W MGAVEGYRIAGGP PI P Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGN-------QSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYP 170
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.820e-57 Identity = 117/177 (66.10%), Postives = 127/177 (71.75%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAG-GP 574 F GKAV L+P+ +E+ GR++MRKT +K SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AG GP Sbjct: 13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPS-------LVHAQSILAIWATQVILMGAVEGYRVAGNGP 182
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 3.628e-57 Identity = 115/172 (66.86%), Postives = 124/172 (72.09%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 F GKAVN+ S R++MRKT +K+ +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP Sbjct: 13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWACQVVLMGAVEGYRIAGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 3.628e-57 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206 HSP 3 Score: 75.485 bits (184), Expect = 2.725e-13 Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA L + + G LGEV DPLY Sbjct: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLY 189
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 6.916e-57 Identity = 116/171 (67.84%), Postives = 125/171 (73.10%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 F GKAV PS + L R++MRKT +K+ VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA W + G G LG P + L + + MGAVEGYRIAGGP Sbjct: 13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSL-VHAQSLLAIWACQVVLMGAVEGYRIAGGP 181 HSP 2 Score: 72.7886 bits (177), Expect = 1.766e-12 Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFS+GGLDYLGNPSL+HAQS+LAIWA L + + G LGE+ DPLY Sbjct: 132 FKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVL-MGAVEGYRIAGGPLGEIVDPLY 190
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 1.367e-56 Identity = 114/172 (66.28%), Postives = 124/172 (72.09%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 F GKAVN+ S L R++MRKT +K+ SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L + + MGA+EGYR+AGGP Sbjct: 13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWACQVVLMGAIEGYRVAGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 1.367e-56 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206 HSP 3 Score: 76.2554 bits (186), Expect = 1.598e-13 Identity = 45/64 (70.31%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI--EGYRVAG---GPLGEVVDPLY 189
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.628e-56 Identity = 115/175 (65.71%), Postives = 121/175 (69.14%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV S +E+ R+SMRKT + GSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP Sbjct: 13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGP 179 HSP 2 Score: 71.2478 bits (173), Expect = 5.140e-12 Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FK G+QIFSEGGL YLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 130 FKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---GPLGEVVDPLY 188
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 5.146e-56 Identity = 116/175 (66.29%), Postives = 121/175 (69.14%), Query Frame = 2 Query: 74 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 GK + L PS EL R +MRK T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP Sbjct: 18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWATQVILMGAVEGYRIAGGP 184 HSP 2 Score: 23.0978 bits (48), Expect = 5.146e-56 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 202 GLADDPEAF 210 HSP 3 Score: 75.0998 bits (183), Expect = 3.559e-13 Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E R+ G LGEV DPLY Sbjct: 135 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIAG---GPLGEVVDPLY 193
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 1.487e-55 Identity = 110/153 (71.90%), Postives = 116/153 (75.82%), Query Frame = 2 Query: 122 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 GRI+MRKT K +SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP Sbjct: 26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWACQVVLMGAVEGYRIAGGP 177 HSP 2 Score: 23.0978 bits (48), Expect = 1.487e-55 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 195 GLADDPEAF 203 HSP 3 Score: 75.485 bits (184), Expect = 2.725e-13 Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA L + + G LGEV DPLY Sbjct: 128 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLY 186
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.527e-55 Identity = 117/177 (66.10%), Postives = 122/177 (68.93%), Query Frame = 2 Query: 74 GKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 GK V + PS EL G R +MRK T K SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP Sbjct: 15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWATQVILMGAVEGYRIAGGP 183 HSP 2 Score: 23.0978 bits (48), Expect = 2.527e-55 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 201 GLADDPEAF 209 HSP 3 Score: 75.0998 bits (183), Expect = 3.559e-13 Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E R+ G LGEV DPLY Sbjct: 134 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIAG---GPLGEVVDPLY 192
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 213.386 bits (542), Expect = 3.294e-55 Identity = 113/165 (68.48%), Postives = 120/165 (72.73%), Query Frame = 2 Query: 92 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 APS + L RI+MRKT +K + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP Sbjct: 17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWAVQVVLMGAVEGYRIAGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 3.294e-55 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206 HSP 3 Score: 76.2554 bits (186), Expect = 1.598e-13 Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+ L + + G LGEV DPLY Sbjct: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVL-MGAVEGYRIAGGPLGEVVDPLY 189 The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bpback to top |