CF417202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 1.241e-54 Identity = 108/153 (70.59%), Postives = 115/153 (75.16%), Query Frame = 2 Query: 122 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 GRI+MRK+ +K +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP Sbjct: 25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWAVQVVLMGAVEGYRIAGGP 176 HSP 2 Score: 23.0978 bits (48), Expect = 1.241e-54 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 194 GLADDPEAF 202 HSP 3 Score: 76.2554 bits (186), Expect = 1.598e-13 Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+ L + + G LGEV DPLY Sbjct: 127 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVL-MGAVEGYRIAGGPLGEVVDPLY 185
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.442e-54 Identity = 117/193 (60.62%), Postives = 126/193 (65.28%), Query Frame = 2 Query: 74 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 G+ +L P N+L G R++MRK +K ++ S SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP PI P Sbjct: 14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYP 199
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 3.581e-54 Identity = 114/182 (62.64%), Postives = 127/182 (69.78%), Query Frame = 2 Query: 86 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604 ++ P N+L G R++MRK TG KSV++ SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P+ L + + MGA+EGYR+AGGP PI P Sbjct: 23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILA-IWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203 HSP 2 Score: 21.9422 bits (45), Expect = 3.581e-54 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDP+AF Sbjct: 211 GLADDPDAF 219
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 3.581e-54 Identity = 114/182 (62.64%), Postives = 127/182 (69.78%), Query Frame = 2 Query: 86 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604 ++ P N+L G R++MRK TG KSV++ SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P+ L + + MGA+EGYR+AGGP PI P Sbjct: 23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILA-IWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203 HSP 2 Score: 21.9422 bits (45), Expect = 3.581e-54 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDP+AF Sbjct: 211 GLADDPDAF 219
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52 Identity = 105/159 (66.04%), Postives = 113/159 (71.07%), Query Frame = 2 Query: 116 NGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 NGGR+SMR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVW + G Q G LG P +L H W MGAVEGYR+ GGP Sbjct: 30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNP-------NLVHAQSILAIWACQVVLMGAVEGYRVGGGP 179
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51 Identity = 114/177 (64.41%), Postives = 121/177 (68.36%), Query Frame = 2 Query: 74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604 G+A+ LAPS EL G R+SMRKT K+VSSGSPWYG DRVKYLGPFSGE PSYLTGEF G LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP PI P Sbjct: 15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWATQVILMGAVEGYRIAGGPLGEVTDPIYP 181
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.650e-50 Identity = 103/150 (68.67%), Postives = 106/150 (70.67%), Query Frame = 2 Query: 143 TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 T K SS SPW+G D VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP Sbjct: 1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWATQVILMGAVEGYRIAGGP 143 HSP 2 Score: 75.0998 bits (183), Expect = 3.559e-13 Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E R+ G LGEV DPLY Sbjct: 94 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIAG---GPLGEVVDPLY 152
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 1.442e-49 Identity = 103/168 (61.31%), Postives = 114/168 (67.86%), Query Frame = 2 Query: 119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 GGR+SMR+T + +S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G G LG P +L H W MG VEGYR+ GGP PI P Sbjct: 32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYP 190 HSP 2 Score: 21.9422 bits (45), Expect = 1.442e-49 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDP+AF Sbjct: 198 GLADDPDAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.880e-49 Identity = 108/178 (60.67%), Postives = 115/178 (64.61%), Query Frame = 2 Query: 104 NELSNG-----GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 NELS R+ M SK+ SGS WYG DR YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP + PI P Sbjct: 21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS-------LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYP 190 HSP 2 Score: 23.0978 bits (48), Expect = 1.880e-49 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 3.194e-49 Identity = 98/159 (61.64%), Postives = 110/159 (69.18%), Query Frame = 2 Query: 116 NGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 NGGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G G LG P +L H W MG +EGYR+ GGP Sbjct: 31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 3.194e-49 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206 The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bpback to top |