CF417202

Overview
NameCF417202
Unique NameCF417202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:52..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.241e-54
Identity = 108/153 (70.59%), Postives = 115/153 (75.16%), Query Frame = 2
Query:  122 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574
            GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G      G    LG P        L  +   +   MGAVEGYRIAGGP
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWAVQVVLMGAVEGYRIAGGP 176          

HSP 2 Score: 23.0978 bits (48), Expect = 1.241e-54
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  194 GLADDPEAF 202          

HSP 3 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query:  423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602
            FKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA+   L    +    +  G LGEV DPLY
Sbjct:  127 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVL-MGAVEGYRIAGGPLGEVVDPLY 185          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.442e-54
Identity = 117/193 (60.62%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   74 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G      G    LG P        L H       W      MGAVEGYRIAGGP      PI P
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYP 199          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.581e-54
Identity = 114/182 (62.64%), Postives = 127/182 (69.78%), Query Frame = 2
Query:   86 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604
            ++ P  N+L   G      R++MRK TG KSV++   SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G      G    LG P+       L  +   +   MGA+EGYR+AGGP      PI P
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILA-IWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203          

HSP 2 Score: 21.9422 bits (45), Expect = 3.581e-54
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDP+AF
Sbjct:  211 GLADDPDAF 219          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.581e-54
Identity = 114/182 (62.64%), Postives = 127/182 (69.78%), Query Frame = 2
Query:   86 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604
            ++ P  N+L   G      R++MRK TG KSV++   SPWYG DRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G      G    LG P+       L  +   +   MGA+EGYR+AGGP      PI P
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILA-IWACQVILMGAIEGYRVAGGPLGEVTDPIYP 203          

HSP 2 Score: 21.9422 bits (45), Expect = 3.581e-54
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDP+AF
Sbjct:  211 GLADDPDAF 219          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52
Identity = 105/159 (66.04%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  116 NGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            NGGR+SMR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVW + G    Q G    LG P       +L H       W      MGAVEGYR+ GGP
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNP-------NLVHAQSILAIWACQVVLMGAVEGYRVGGGP 179          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 114/177 (64.41%), Postives = 121/177 (68.36%), Query Frame = 2
Query:   74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYG DRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW + G      G    LG P        L  +   +   MGAVEGYRIAGGP      PI P
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWATQVILMGAVEGYRIAGGPLGEVTDPIYP 181          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.650e-50
Identity = 103/150 (68.67%), Postives = 106/150 (70.67%), Query Frame = 2
Query:  143 TGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            T  K  SS SPW+G D VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G      G    LG P        L H       W      MGAVEGYRIAGGP
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWATQVILMGAVEGYRIAGGP 143          

HSP 2 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602
            FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  R+     G LGEV DPLY
Sbjct:   94 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV--EGYRIAG---GPLGEVVDPLY 152          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.442e-49
Identity = 103/168 (61.31%), Postives = 114/168 (67.86%), Query Frame = 2
Query:  119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604
            GGR+SMR+T   + +S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G      G    LG P       +L H       W      MG VEGYR+ GGP      PI P
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYP 190          

HSP 2 Score: 21.9422 bits (45), Expect = 1.442e-49
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDP+AF
Sbjct:  198 GLADDPDAF 206          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.880e-49
Identity = 108/178 (60.67%), Postives = 115/178 (64.61%), Query Frame = 2
Query:  104 NELSNG-----GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604
            NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVW + G      G    LG P        L H       W      MGAVEGYR+AGGP    + PI P
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPS-------LVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYP 190          

HSP 2 Score: 23.0978 bits (48), Expect = 1.880e-49
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  198 GLADDPEAF 206          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.194e-49
Identity = 98/159 (61.64%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  116 NGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G      G    LG P       +L H       W      MG +EGYR+ GGP
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180          

HSP 2 Score: 23.0978 bits (48), Expect = 3.194e-49
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  198 GLADDPEAF 206          
The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_ORYSJ1.241e-5470.59Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY1.442e-5460.62Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY3.581e-5462.64Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY3.581e-5462.64Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_SILPR8.748e-5266.04Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_SOYBN3.324e-5164.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA1.650e-5068.67Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_GOSHI1.442e-4961.31Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU1.880e-4960.67Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_TOBAC3.194e-4961.64Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-132 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bp
TTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCA
GGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGT
ACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTC
CCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAAC
CTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGT
TGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTC
AAGTTCGGTGAGGCCGTATGGGTTCAAGGCGGGGGCCCAGATCTTCAGCG
AGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGC
ATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAG
GGTTACAGAATTGCTGGAGGGCCGGCTCGGTGAAGTGACTGACCCATTGT
ACCCAGGTGGCAGCTTTGATCCATTGGGGTTTGGCTGATGACCCGGAGGC
TTTTG
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