CF417202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49 Identity = 102/156 (65.38%), Postives = 110/156 (70.51%), Query Frame = 2 Query: 122 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWS----WMGAVEGYRIAGG 571 GRI+MRKT +K SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+ LGCVFPELLARNGVKFGE VW + G G L P +P H + A W+ MGAVEGY +AGG Sbjct: 28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG---LSHP-GNPSLVHAQSI-LAIWACQVVLMGAVEGYHVAGG 178 HSP 2 Score: 70.4774 bits (171), Expect = 8.767e-12 Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGL + GNPSL+HAQSILAIWA L + + GRLGEV DPLY Sbjct: 130 FKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVL-MGAVEGYHVAGGRLGEVVDPLY 188
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 7.073e-49 Identity = 106/181 (58.56%), Postives = 118/181 (65.19%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 FVG+AV S NE GRI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G G LG P +L H W MG VEGYR+ GGP Sbjct: 11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 7.073e-49 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48 Identity = 100/166 (60.24%), Postives = 112/166 (67.47%), Query Frame = 2 Query: 125 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 R++MR+T SKS S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP PI P Sbjct: 35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYP 193
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 2.665e-48 Identity = 95/152 (62.50%), Postives = 109/152 (71.71%), Query Frame = 2 Query: 119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 GGR++MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVW + G G LG P L + ++ MG VEGYR+ GGP Sbjct: 4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA-IWASQVVLMGFVEGYRVGGGP 152 HSP 2 Score: 23.0978 bits (48), Expect = 2.665e-48 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 170 GLADDPEAF 178
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 3.468e-48 Identity = 96/152 (63.16%), Postives = 108/152 (71.05%), Query Frame = 2 Query: 119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574 GGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVW + G G LG P L + A+ MG VEGYR+ GGP Sbjct: 32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA-IWAAQVVLMGFVEGYRVGGGP 180 HSP 2 Score: 23.0978 bits (48), Expect = 3.468e-48 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 198 GLADDPEAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48 Identity = 102/172 (59.30%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 92 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 AP +EL +GGRI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVW + G G LG P +L H W MG VEGYR+ GGP Sbjct: 16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48 Identity = 102/172 (59.30%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 92 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 AP +EL +GGRI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVW + G G LG P +L H W MG VEGYR+ GGP Sbjct: 16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 4.906e-47 Identity = 97/157 (61.78%), Postives = 109/157 (69.43%), Query Frame = 2 Query: 122 GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 GR SMR+T K+V S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVW + G G LG P +L H W MG +EGYR+ GGP Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWATQVVLMGLIEGYRVGGGP 179 HSP 2 Score: 23.0978 bits (48), Expect = 4.906e-47 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 197 GLADDPEAF 205
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.087e-45 Identity = 101/183 (55.19%), Postives = 114/183 (62.30%), Query Frame = 2 Query: 89 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 L P NEL + RI+MR+T + S WYG DR KYLGPFS PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVW + G G G P +L H W MG +EGYR+ GG P++P Sbjct: 18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNP-------NLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLP 191
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45 Identity = 95/156 (60.90%), Postives = 104/156 (66.67%), Query Frame = 2 Query: 125 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 R +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVW + G G LG P +L H W MG VEGYR+ GGP Sbjct: 34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNP-------NLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180 The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bpback to top |