CF417202

Overview
NameCF417202
Unique NameCF417202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:52..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 102/156 (65.38%), Postives = 110/156 (70.51%), Query Frame = 2
Query:  122 GRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWS----WMGAVEGYRIAGG 571
            GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VW + G      G    L  P  +P   H   +  A W+     MGAVEGY +AGG
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG---LSHP-GNPSLVHAQSI-LAIWACQVVLMGAVEGYHVAGG 178          

HSP 2 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602
            FKAG+QIFSEGGL + GNPSL+HAQSILAIWA    L    +    +  GRLGEV DPLY
Sbjct:  130 FKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVL-MGAVEGYHVAGGRLGEVVDPLY 188          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.073e-49
Identity = 106/181 (58.56%), Postives = 118/181 (65.19%), Query Frame = 2
Query:   68 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVW + G      G    LG P       +L H       W      MG VEGYR+ GGP
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP-------NLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180          

HSP 2 Score: 23.0978 bits (48), Expect = 7.073e-49
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  198 GLADDPEAF 206          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 100/166 (60.24%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  125 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVW + G      G    LG P        L H       W      MGAVEGYR+AGGP      PI P
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYP 193          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.665e-48
Identity = 95/152 (62.50%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVW + G      G    LG P        L  +  ++   MG VEGYR+ GGP
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA-IWASQVVLMGFVEGYRVGGGP 152          

HSP 2 Score: 23.0978 bits (48), Expect = 2.665e-48
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  170 GLADDPEAF 178          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.468e-48
Identity = 96/152 (63.16%), Postives = 108/152 (71.05%), Query Frame = 2
Query:  119 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGP 574
            GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVW + G      G    LG P        L  +  A+   MG VEGYR+ GGP
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILA-IWAAQVVLMGFVEGYRVGGGP 180          

HSP 2 Score: 23.0978 bits (48), Expect = 3.468e-48
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  198 GLADDPEAF 206          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 102/172 (59.30%), Postives = 115/172 (66.86%), Query Frame = 2
Query:   92 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            AP  +EL      +GGRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVW + G      G    LG P       +L H       W      MG VEGYR+ GGP
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.868e-48
Identity = 102/172 (59.30%), Postives = 115/172 (66.86%), Query Frame = 2
Query:   92 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            AP  +EL      +GGRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVW + G      G    LG P       +L H       W      MG VEGYR+ GGP
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWAVQVVLMGFVEGYRVGGGP 178          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.906e-47
Identity = 97/157 (61.78%), Postives = 109/157 (69.43%), Query Frame = 2
Query:  122 GRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVW + G      G    LG P       +L H       W      MG +EGYR+ GGP
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNP-------NLVHAQSILAIWATQVVLMGLIEGYRVGGGP 179          

HSP 2 Score: 23.0978 bits (48), Expect = 4.906e-47
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  628 GLADDPEAF 654
            GLADDPEAF
Sbjct:  197 GLADDPEAF 205          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.087e-45
Identity = 101/183 (55.19%), Postives = 114/183 (62.30%), Query Frame = 2
Query:   89 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604
            L P  NEL     +   RI+MR+T   +  S   WYG DR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVW + G      G     G P       +L H       W      MG +EGYR+ GG       P++P
Sbjct:   18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNP-------NLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLP 191          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 95/156 (60.90%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  125 RISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574
            R +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVW + G      G    LG P       +L H       W      MG VEGYR+ GGP
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNP-------NLIHAQSILAIWATQVVLMGFVEGYRVGGGP 180          
The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB48_MAIZE4.064e-4965.38Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB24_SOLLC7.073e-4958.56Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2_PHYPA1.182e-4860.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC2.665e-4862.50Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP3.468e-4863.16Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ5.868e-4859.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.868e-4859.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI4.906e-4761.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH2.087e-4555.19Chlorophyll a-b binding protein type I, chloroplas... [more]
CB215_PEA7.931e-4560.90Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-132 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bp
TTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCA
GGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGT
ACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTC
CCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAAC
CTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGT
TGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTC
AAGTTCGGTGAGGCCGTATGGGTTCAAGGCGGGGGCCCAGATCTTCAGCG
AGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGC
ATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAG
GGTTACAGAATTGCTGGAGGGCCGGCTCGGTGAAGTGACTGACCCATTGT
ACCCAGGTGGCAGCTTTGATCCATTGGGGTTTGGCTGATGACCCGGAGGC
TTTTG
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