CF417202

Overview
NameCF417202
Unique NameCF417202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:52..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  146 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 400
            GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.275e-12
Identity = 44/64 (68.75%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602
            FKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA    L G +  E  RV     G LGE  DPLY
Sbjct:   16 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI--EGYRVG---GGPLGEGLDPLY 74          

HSP 2 Score: 20.7866 bits (42), Expect = 4.275e-12
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  628 GLADDPEA 651
            GLADDPEA
Sbjct:   83 GLADDPEA 90          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 52/140 (37.14%), Postives = 66/140 (47.14%), Query Frame = 2
Query:   71 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKP 484
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L   N VK  E  W       L  G+A  LG P P
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQE--WAA-----LPDGQATYLGNPVP 134          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  224 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 406
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL  NG  F
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF 439          

HSP 2 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  215 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGG 433
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  W + G
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAG 258          
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  218 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKP 484
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L   N VK  E   + G       G+A  LG+P P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPG-------GQATYLGQPVP 135          
The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_PETHY2.329e-1244.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY4.275e-1268.75Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB121_HORVU5.189e-1237.14Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR6.776e-1257.38Light-harvesting complex I LH38 proteins (Fragment... [more]
CB11_SOLLC1.972e-1143.96Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-132 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bp
TTACCCAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCA
GGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGT
ACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTC
CCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAAC
CTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGT
TGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTC
AAGTTCGGTGAGGCCGTATGGGTTCAAGGCGGGGGCCCAGATCTTCAGCG
AGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGC
ATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAG
GGTTACAGAATTGCTGGAGGGCCGGCTCGGTGAAGTGACTGACCCATTGT
ACCCAGGTGGCAGCTTTGATCCATTGGGGTTTGGCTGATGACCCGGAGGC
TTTTG
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