CF417202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12 Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 2 Query: 146 GSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 400 GS+SV+ + DR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.275e-12 Identity = 44/64 (68.75%), Postives = 46/64 (71.88%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAGAQIFSEGGLDYLGNP+LIHAQSILAIWA L G + E RV G LGE DPLY Sbjct: 16 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI--EGYRVG---GGPLGEGLDPLY 74 HSP 2 Score: 20.7866 bits (42), Expect = 4.275e-12 Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 Query: 628 GLADDPEA 651 GLADDPEA Sbjct: 83 GLADDPEA 90
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12 Identity = 52/140 (37.14%), Postives = 66/140 (47.14%), Query Frame = 2 Query: 71 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKP 484 VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L N VK E W L G+A LG P P Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQE--WAA-----LPDGQATYLGNPVP 134
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12 Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 2 Query: 224 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 406 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL NG F Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF 439 HSP 2 Score: 70.0922 bits (170), Expect = 1.156e-11 Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 2 Query: 215 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGG 433 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ W + G Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAG 258
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11 Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 2 Query: 218 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKP 484 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L N VK E + G G+A LG+P P Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPG-------GQATYLGQPVP 135 The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bpback to top |