CF417210

Overview
NameCF417210
Unique NameCF417210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 2
Query:   47 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            K  KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:    2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.078e-42
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            +W K ++ +V + +CK AK+G TPS+IG  LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K   L P WKYES  ASTLVA
Sbjct:   24 AWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32
Identity = 66/84 (78.57%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 253
            +WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct:   24 TWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358
            W+K+  ++VE+ +    +KG  PS IGVILRD +GI  VK+VTG  +L+IL+  GLAPEIPEDL +L+K+A+ +RKHLE + KD  SK  L L+ES+IHRL +YYK+   LPP WKYE
Sbjct:   23 WVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 63/127 (49.61%), Postives = 92/127 (72.44%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            +W++ ++++VE  + K  K+G + + IG ILRD +GI  VK +TG KI +IL+ +GLAPEIPEDL  LI++AV +RKHLE++ KDK S+  L L+ES+I RL +YY++T KLP  W+Y+   A  LV
Sbjct:   24 AWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    5 WLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            WLK+  S  D+E  + + AKKG TPS IG+ILRD +G+  VK VTG K+++IL+ HG+   +PEDL  L++KAV +R+HLE + KD  +K  L+ +ES+IHRL +YYK+  +LPP WKY    A  +V+
Sbjct:   23 WLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358
            SW++ S ++VE  +   AK+G  P+ IG+ LRD +GI  VK +TG KI  IL+ HGLAPE+PEDL +LI++A  +R+HL+R+ KD  SK  L L+ES+IHRL +YYK+   LP  WKY+
Sbjct:   24 SWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            W++ + ++VE  + + AKKG +PS IG+ILRD +GI  VK +TG K+ +IL+  GLAP+IPEDL++LI+KA  +R+HL  + KDK +K  L  +ES+I RLA YYK+  KLP  WKYE   A  L +
Sbjct:   23 WVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYKRIGKLPKEWKYEPEKAELLAS 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            +W  I++++ E+ I K AK+G   + IG+ILRDS+GI  VK VTG  + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD  SK  L L ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   24 AWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            W++++ ++VE  + + AK+G TPS IG+ILRD +GI  VK + G K+ +IL+  GLAP+IPEDL++LI+KAV +R+H+    +DK +K  L  +ES+I RL RYYK   KLP  W Y+   A  LVA
Sbjct:   23 WVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVA 149          
The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_MUSDO5.285e-4679.6540S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_DICDI2.078e-4267.9740S ribosomal protein S13 OS=Dictyostelium discoid... [more]
RS13_PIG1.493e-3278.5740S ribosomal protein S13 (Fragment) OS=Sus scrofa... [more]
RS15_THEPD3.326e-3255.0830S ribosomal protein S15P/S13e OS=Thermofilum pen... [more]
RS15_PYRKO1.825e-3049.6130S ribosomal protein S15P/S13e OS=Pyrococcus koda... [more]
RS15_STAMF1.545e-2948.8430S ribosomal protein S15P/S13e OS=Staphylothermus... [more]
RS15_METKA1.545e-2951.2630S ribosomal protein S15P/S13e OS=Methanopyrus ka... [more]
RS15_SULTO2.018e-2949.6130S ribosomal protein S15P/S13e OS=Sulfolobus toko... [more]
RS15_META32.018e-2949.6130S ribosomal protein S15P/S13e OS=Methanococcus a... [more]
RS15_SULSO3.442e-2948.0330S ribosomal protein S15P/S13e OS=Sulfolobus solf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-140 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bp
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGATTTAGTCCTTGGAGGAACAGAAATTTG
GAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTNCGAAATT
TTGTATTTTTGATGCACTTTATATTCGCTAAAAAAAAAAAAAA
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