CF417210

Overview
NameCF417210
Unique NameCF417210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.495e-29
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W++ + + VE  + + AKKG   +QIG+ILRD++GI  VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD  SK  L L+ES+I RL +YYK    LP  W+Y   TA  LV
Sbjct:   25 WVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRYTPETARLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRIL (30S ribosomal protein S15P/S13e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps15p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.870e-29
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 379
            +W++ +  +VE  + + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  EIPEDL +LIK+A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLP  + Y     S L
Sbjct:   24 TWIQYTPDEVEQLVVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIRQEIPEDLLNLIKRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKLPKEFVYNPEALSHL 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRAE (30S ribosomal protein S15P/S13e OS=Pyrobaculum aerophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.001e-28
Identity = 60/126 (47.62%), Postives = 89/126 (70.63%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 379
            +W++ + ++VE  + + A++G  PSQIG+ILRD +GI  V+ +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLPP + Y     S L
Sbjct:   24 TWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYGIPLVRPITGKKLTKILEEHGIKYELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLVKYYKRVGKLPPDFVYNPQALSHL 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.001e-28
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W+    ++++  I + +KKG  PS IG+ILRD  G+  VK + G K+++I++  G+AP IPEDL+HL+K+AV +R HL  + KDK S   L+ +ES+I RL +YYK+  KLPP WKY+   A  LV
Sbjct:   23 WVPFGPEEIKALIVELSKKGYGPSMIGIILRDQFGVPLVKPIVGKKLVKIMEEQGVAPPIPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYDPERARLLV 148          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRAR (30S ribosomal protein S15P/S13e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps15p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.231e-28
Identity = 59/126 (46.83%), Postives = 89/126 (70.63%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 379
            +W++ + ++VE    + A++G  PSQIG++LRD +GI  VKS+TG K++++L+ HG+  EIPEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  +LP  + Y     S L
Sbjct:   27 TWIQYTPEEVEQLAVELARRGFQPSQIGIVLRDQYGIPLVKSITGKKLVKVLEEHGIKYEIPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLIKYYKRVGRLPRDFVYNPQALSHL 152          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRCJ (30S ribosomal protein S15P/S13e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.477e-28
Identity = 59/126 (46.83%), Postives = 87/126 (69.05%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 379
            +W++ + ++VE    + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  K+P  + Y     S L
Sbjct:   24 TWIQYTPEEVEQLAVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIKQELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKIPQDFVYNPEALSHL 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METTH (30S ribosomal protein S15P/S13e OS=Methanobacterium thermoautotrophicum GN=rps15p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 61/126 (48.41%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W++ S++++ED I K  ++G + S+IG+ILRD HGI  VK+VTG KI +IL+ H + PE PEDL +LI+KAV IR HL+ + KD  ++  L +VES+I RL RYY +   LP  W+Y+   A+ LV
Sbjct:    8 WVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHGIPSVKAVTGLKITQILEKHEMKPEYPEDLMNLIRKAVNIRDHLKEHPKDLHTRRGLQIVESKIRRLVRYYVREGVLPEGWRYDPQKAALLV 133          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METS5 (30S ribosomal protein S15P/S13e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps15p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 60/127 (47.24%), Postives = 86/127 (67.72%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            W++ S ++VE  I + AKKG TPS IG++LRD +GI   K + G K+ + LK  GLA +IPEDL++LI++AV +R+HL     DK +K  L  +ES+I RL+RYYK+ +KLP  W Y+   A  LV+
Sbjct:   23 WVRFSREEVEMLIEELAKKGYTPSMIGIVLRDQYGIPLAKPIIGKKVNQFLKDKGLASQIPEDLFNLIRRAVNVRRHLNEYPGDKTAKKGLEEIESKIRRLSRYYKRVEKLPQDWTYDPAKAELLVS 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 355
            WL  S +DVE  + + A++G TPS IGVILRD +GI  VK VT  +I  IL+ +GL P+IPEDL  LI++AV IR+HLE + KD  +K  L+L ES+IHRL +YYK+T  LP  + Y
Sbjct:   25 WLSYSPEDVERLVVELARRGFTPSLIGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYKRTGVLPLDFTY 141          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METST (30S ribosomal protein S15P/S13e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps15p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.221e-27
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W++ S +++E+ I K  K+G + SQIG+ LRD HGI   K+V G KI  ILK +G   E PEDL +LIK+AV IR+HLE N KD  +K  LI +ES+I RL +YY +   LP  W+Y+  TA+ LV
Sbjct:    7 WVEQSPEEIEELIVKLHKEGQSTSQIGITLRDQHGIPNTKAVLGEKITDILKRNGTDFEYPEDLLNLIKRAVNIREHLEENPKDIHTKRGLIKIESKIRRLVKYYTRNNVLPEGWRYDPKTAALLV 132          
The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METJA4.495e-2949.2130S ribosomal protein S15P/S13e OS=Methanocaldococ... [more]
RS15_PYRIL5.870e-2949.2130S ribosomal protein S15P/S13e OS=Pyrobaculum isl... [more]
RS15_PYRAE1.001e-2847.6230S ribosomal protein S15P/S13e OS=Pyrobaculum aer... [more]
RS15_IGNH41.001e-2846.0330S ribosomal protein S15P/S13e OS=Ignicoccus hosp... [more]
RS15_PYRAR2.231e-2846.8330S ribosomal protein S15P/S13e OS=Pyrobaculum ars... [more]
RS15_PYRCJ8.477e-2846.8330S ribosomal protein S15P/S13e OS=Pyrobaculum cal... [more]
RS15_METTH1.107e-2748.4130S ribosomal protein S15P/S13e OS=Methanobacteriu... [more]
RS15_METS51.107e-2747.2430S ribosomal protein S15P/S13e OS=Metallosphaera ... [more]
RS15_CALMQ1.888e-2752.9930S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]
RS15_METST3.221e-2749.2130S ribosomal protein S15P/S13e OS=Methanosphaera ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-140 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bp
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGATTTAGTCCTTGGAGGAACAGAAATTTG
GAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTNCGAAATT
TTGTATTTTTGATGCACTTTATATTCGCTAAAAAAAAAAAAAA
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