CF417210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METBF (30S ribosomal protein S15P/S13e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps15p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W KI +++V K+G++ ++IG+ LRD +G+ K +TG KI ILK + + P +PEDL +LI KA+ +RKHL N+KD +K L L ES+I RL +YY++ K LP W Y+ TA ++ Sbjct: 25 WCKIGAEEVTTITLDLWKQGVSTAEIGMTLRDRYGVPDAKLITGKKITTILKENNVYPNVPEDLTNLIVKALRLRKHLSVNKKDVHNKRALNLTESKIRRLVKYYQQEKVLPRDWFYKPETAEMMI 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METMJ (30S ribosomal protein S15P/S13e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps15p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23 Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W + ++E + K G++ SQIG++LRD + + VK TG +I IL+ GL EIPEDL +L++KA+ IRKHL N KD +K +L + ES++ RL +YY ++ ++P W Y+ TA L+ Sbjct: 25 WSNTDATEIEKIVVDLRKDGMSTSQIGLVLRDRYAVPDVKLATGKRIGEILREKGLESEIPEDLRNLMEKALGIRKHLAENNKDVHNKRQLQIAESKVRRLVKYYVRSGRMPKGWTYKPETAEILL 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_ENCCU (40S ribosomal protein S13 OS=Encephalitozoon cuniculi GN=RPS13 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22 Identity = 48/117 (41.03%), Postives = 73/117 (62.39%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 352 +WL S +++ ++ + KG+ IG LRD +GI + V G I R L+ +G+ P+IP DL L+ +A +R HL RKD +K+RLILV SR++R+ARYYK+ ++P WK Sbjct: 24 TWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_NANEQ (30S ribosomal protein S15P/S13e OS=Nanoarchaeum equitans GN=rps15p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22 Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 355 W + VE+ I + AK+G +P+ IG+ILRD +GI V+ G + L+ GL P+IP DL +L+K+A + KH+E N +D +K L+ S+IHRLA+YYK+ LP WKY Sbjct: 27 WAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKY 143
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METB6 (30S ribosomal protein S15P/S13e OS=Methanoregula boonei (strain 6A8) GN=rps15p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.236e-20 Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 +W +E I K+G + S IG++LRD +G+ VK VTG I IL + ++ EIPEDL L+ KA+ +RKHL N KD +K +L LVE++I RL +YY T+KLP + Y+ A L++ Sbjct: 24 AWSNTDKAAIEKLIVDLRKEGTSASMIGLVLRDRYGVPDVKMVTGKSIGDILTENKVSSEIPEDLRDLMVKALGLRKHLGENPKDLHNKRQLHLVEAKIRRLVKYYIGTRKLPAGFTYKPENAEILLS 151
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METTP (30S ribosomal protein S15P/S13e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps15p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19 Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER----------------NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 W +S +++E I ++G++ + IG+ LRD +G+ +K + G + L+ PEIPEDL +L++KA+ +R+HL R KD +K L LVES+I RL RYYK+ +LP W+Y TA ++ Sbjct: 25 WCDVSKEELEKTIMTLHERGMSNAMIGLTLRDQYGVPNLKLILGKSLSSFLRDRNALPEIPEDLSNLMRKALRLRRHLLRAQPRGTVSDTSISRLPRTKDIHNKRALQLVESKIRRLVRYYKQVGRLPATWEYRPETAEIQIS 167
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PICTO (30S ribosomal protein S15P/S13e OS=Picrophilus torridus GN=rps15p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19 Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358 SW++ S ++++ I K K+G+T S IG+ LRD + I + V K+ ++LK + L ++PEDL LI++ KHL N+ D ++K + L+ S++ RL RYYK+T +LP W E Sbjct: 24 SWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEAC (30S ribosomal protein S15P/S13e OS=Thermoplasma acidophilum GN=rps15p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 349 SW++ S +V + I K G+ PS IG+ LRD +GI VK+V G K+ ++L GL ++PEDL +LIK+ + KH+E N KD+ +K L+ +++ RL +YYK+T L W Sbjct: 23 SWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGIPTVKAVLGMKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKRGRDLIMAKMLRLVKYYKRTGVLDEKW 138
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HALSA (30S ribosomal protein S15P/S13e OS=Halobacterium salinarium GN=rps15p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17 Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W + +E+ + + A++G PSQIG+ LRD + VK TG K+ IL+AH PE+PED +L++KAV + +H+E N +D +K L +S+I RLA YY + KL + Y TA ++ Sbjct: 25 WSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDHQNKRALQNTQSKIRRLADYY-RGDKLDEEFAYSYETAREII 153
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEVO (30S ribosomal protein S15P/S13e OS=Thermoplasma volcanium GN=rps15p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17 Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 349 +W++ S ++ + K G+T S +G+ LRD +G+ VK++ G K+ ++L G+ EIPEDL LIK+ + KH+E N KD +K L+ +++ RL RYYK+T L W Sbjct: 23 NWVQYSKDEILNIAVDLKKSGMTSSVVGIRLRDQYGVPTVKAIFGKKLNKLLAEKGIRDEIPEDLNSLIKRYNNVAKHVELNPKDHSNKRGRDLIMAKMLRLVRYYKRTGVLDQKW 138 The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bpback to top |