CF417210

Overview
NameCF417210
Unique NameCF417210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METBF (30S ribosomal protein S15P/S13e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps15p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W KI +++V        K+G++ ++IG+ LRD +G+   K +TG KI  ILK + + P +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY++ K LP  W Y+  TA  ++
Sbjct:   25 WCKIGAEEVTTITLDLWKQGVSTAEIGMTLRDRYGVPDAKLITGKKITTILKENNVYPNVPEDLTNLIVKALRLRKHLSVNKKDVHNKRALNLTESKIRRLVKYYQQEKVLPRDWFYKPETAEMMI 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METMJ (30S ribosomal protein S15P/S13e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W    + ++E  +    K G++ SQIG++LRD + +  VK  TG +I  IL+  GL  EIPEDL +L++KA+ IRKHL  N KD  +K +L + ES++ RL +YY ++ ++P  W Y+  TA  L+
Sbjct:   25 WSNTDATEIEKIVVDLRKDGMSTSQIGLVLRDRYAVPDVKLATGKRIGEILREKGLESEIPEDLRNLMEKALGIRKHLAENNKDVHNKRQLQIAESKVRRLVKYYVRSGRMPKGWTYKPETAEILL 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_ENCCU (40S ribosomal protein S13 OS=Encephalitozoon cuniculi GN=RPS13 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 48/117 (41.03%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 352
            +WL  S  +++ ++ +   KG+    IG  LRD +GI +   V G  I R L+ +G+ P+IP DL  L+ +A  +R HL   RKD  +K+RLILV SR++R+ARYYK+  ++P  WK
Sbjct:   24 TWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_NANEQ (30S ribosomal protein S15P/S13e OS=Nanoarchaeum equitans GN=rps15p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 355
            W     + VE+ I + AK+G +P+ IG+ILRD +GI  V+   G  +   L+  GL P+IP DL +L+K+A  + KH+E N +D  +K    L+ S+IHRLA+YYK+   LP  WKY
Sbjct:   27 WAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKY 143          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METB6 (30S ribosomal protein S15P/S13e OS=Methanoregula boonei (strain 6A8) GN=rps15p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.236e-20
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            +W       +E  I    K+G + S IG++LRD +G+  VK VTG  I  IL  + ++ EIPEDL  L+ KA+ +RKHL  N KD  +K +L LVE++I RL +YY  T+KLP  + Y+   A  L++
Sbjct:   24 AWSNTDKAAIEKLIVDLRKEGTSASMIGLVLRDRYGVPDVKMVTGKSIGDILTENKVSSEIPEDLRDLMVKALGLRKHLGENPKDLHNKRQLHLVEAKIRRLVKYYIGTRKLPAGFTYKPENAEILLS 151          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METTP (30S ribosomal protein S15P/S13e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps15p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER----------------NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            W  +S +++E  I    ++G++ + IG+ LRD +G+  +K + G  +   L+     PEIPEDL +L++KA+ +R+HL R                  KD  +K  L LVES+I RL RYYK+  +LP  W+Y   TA   ++
Sbjct:   25 WCDVSKEELEKTIMTLHERGMSNAMIGLTLRDQYGVPNLKLILGKSLSSFLRDRNALPEIPEDLSNLMRKALRLRRHLLRAQPRGTVSDTSISRLPRTKDIHNKRALQLVESKIRRLVRYYKQVGRLPATWEYRPETAEIQIS 167          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PICTO (30S ribosomal protein S15P/S13e OS=Picrophilus torridus GN=rps15p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358
            SW++ S  ++++ I K  K+G+T S IG+ LRD + I   + V   K+ ++LK + L  ++PEDL  LI++     KHL  N+ D ++K +  L+ S++ RL RYYK+T +LP  W  E
Sbjct:   24 SWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEAC (30S ribosomal protein S15P/S13e OS=Thermoplasma acidophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 349
            SW++ S  +V + I    K G+ PS IG+ LRD +GI  VK+V G K+ ++L   GL  ++PEDL +LIK+   + KH+E N KD+ +K    L+ +++ RL +YYK+T  L   W
Sbjct:   23 SWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGIPTVKAVLGMKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKRGRDLIMAKMLRLVKYYKRTGVLDEKW 138          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HALSA (30S ribosomal protein S15P/S13e OS=Halobacterium salinarium GN=rps15p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W  +    +E+ + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+AH   PE+PED  +L++KAV + +H+E N +D  +K  L   +S+I RLA YY +  KL   + Y   TA  ++
Sbjct:   25 WSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDHQNKRALQNTQSKIRRLADYY-RGDKLDEEFAYSYETAREII 153          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEVO (30S ribosomal protein S15P/S13e OS=Thermoplasma volcanium GN=rps15p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 349
            +W++ S  ++ +      K G+T S +G+ LRD +G+  VK++ G K+ ++L   G+  EIPEDL  LIK+   + KH+E N KD  +K    L+ +++ RL RYYK+T  L   W
Sbjct:   23 NWVQYSKDEILNIAVDLKKSGMTSSVVGIRLRDQYGVPTVKAIFGKKLNKLLAEKGIRDEIPEDLNSLIKRYNNVAKHVELNPKDHSNKRGRDLIMAKMLRLVRYYKRTGVLDQKW 138          
The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METBF2.822e-2342.0630S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METMJ3.686e-2340.4830S ribosomal protein S15P/S13e OS=Methanoculleus ... [more]
RS13_ENCCU4.075e-2241.0340S ribosomal protein S13 OS=Encephalitozoon cunic... [more]
RS15_NANEQ5.322e-2242.7430S ribosomal protein S15P/S13e OS=Nanoarchaeum eq... [more]
RS15_METB62.236e-2041.4130S ribosomal protein S15P/S13e OS=Methanoregula b... [more]
RS15_METTP2.472e-1934.2730S ribosomal protein S15P/S13e OS=Methanosaeta th... [more]
RS15_PICTO7.193e-1937.8230S ribosomal protein S15P/S13e OS=Picrophilus tor... [more]
RS15_THEAC1.227e-1840.5230S ribosomal protein S15P/S13e OS=Thermoplasma ac... [more]
RS15_HALSA5.155e-1736.9230S ribosomal protein S15P/S13e OS=Halobacterium s... [more]
RS15_THEVO6.732e-1737.0730S ribosomal protein S15P/S13e OS=Thermoplasma vo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-140 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bp
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGATTTAGTCCTTGGAGGAACAGAAATTTG
GAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTNCGAAATT
TTGTATTTTTGATGCACTTTATATTCGCTAAAAAAAAAAAAAA
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