CF417210

Overview
NameCF417210
Unique NameCF417210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HALWD (30S ribosomal protein S15P/S13e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps15p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.364e-16
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 322
            W  I +  +E+ + + A++G  PSQIG+ LRD       I  VK  T  K+  IL+ H   PE+PEDL +L+++A+ +R+H++ N +D  +K  L   ES+I RLA YY+
Sbjct:   25 WSDIDADAIEERVVELAEQGHEPSQIGMKLRDEGVKGTPIPDVKLATDKKVTTILEEHNAKPELPEDLRNLMERAIRLRRHVDENGQDMQNKRALQNTESKIRRLASYYR 134          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_NATPD (30S ribosomal protein S15P/S13e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps15p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.658e-15
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 331
            W ++    +ED + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+ +    E+PEDL +L+++A+ +R+H++RN  D  +K  L   ES+I RL  YY+  K
Sbjct:   25 WSEVDEDAIEDRVVELAEEGYDPSQIGLKLRDEGVQGVPVPDVKLATGKKVTEILEENDAENELPEDLRNLMERAIRLREHMDRNPGDAQNKRALQNTESKIRRLVDYYRGDK 137          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HALMA (30S ribosomal protein S15P/S13e OS=Haloarcula marismortui GN=rps15p PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 322
            W  +    +E  + + A++G +PS+IG+ LRD       I  V   TG K+  IL+ +   P++PEDL +L+++AV +R H++ N  D  +K  L   +S+I RL  YY+
Sbjct:   25 WSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYR 134          
The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_HALWD4.364e-1639.0930S ribosomal protein S15P/S13e OS=Haloquadratum w... [more]
RS15_NATPD1.658e-1537.1730S ribosomal protein S15P/S13e OS=Natronomonas ph... [more]
RS15_HALMA1.006e-1234.5530S ribosomal protein S15P/S13e OS=Haloarcula mari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-140 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bp
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGATTTAGTCCTTGGAGGAACAGAAATTTG
GAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTNCGAAATT
TTGTATTTTTGATGCACTTTATATTCGCTAAAAAAAAAAAAAA
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