CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.614e-29
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T G+ I C+AAVAWE  KPL +E+V+VAPPQAGEVRIKI+ T +CHTDAYT SG DPEG+FP +LGHE AGIVESVGEG
Sbjct:    1 ATVGKTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.051e-29
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   68 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEG
Sbjct:    4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.052e-28
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI C+AAVAWE  KPLVIE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEG
Sbjct:    3 NTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   68 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            QVI CKAAVAWE  KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEG
Sbjct:    4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST GQ+I CKAAVAWE  KPLVIE+V+VAPPQ  EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEG
Sbjct:    1 MSTTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.794e-28
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQ+I C+AAVAWE  KPLVIE+V+VAPPQAGEVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEG
Sbjct:    3 NTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.343e-28
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MS EG+ ITCKAAVAW   +PL IED+QVAPP+A EVR+K+ ++A+CHTDAYT SG DPEG FP +LGHE AGIVES+GEG
Sbjct:    1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.343e-28
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 2
Query:   62 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +GQVI CKAAVAWE  KPL +E+++VAPP+A EVR+K+L TA+CHTDAYT SG DPEG FP +LGHE AGIVESVGEG
Sbjct:    4 DGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.060e-28
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI C+AAVAWE  KPLVIE+V+VAPPQA EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEG
Sbjct:    3 NTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 122.865 bits (307), Expect = 5.219e-28
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   68 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEG
Sbjct:    4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEG 79          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADHL_GADMO3.614e-2972.50Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_RAT8.051e-2978.95Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADH1_TRIRP1.052e-2873.75Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADHX_MOUSE1.373e-2878.95Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADH1_ARATH1.373e-2874.07Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH1_PEA1.794e-2872.50Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
FADH1_SCHPO2.343e-2870.37Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_MYXGL2.343e-2873.08Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH_MALDO3.060e-2873.75Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHX_HUMAN5.219e-2876.32Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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