CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            M T G+VI CKAAV W  N+P  IED++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA GIVESVGE
Sbjct:    1 MDTAGKVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKG-TMVSKFPVIVGHEAVGIVESVGE 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L P I GHEAAGIVES+GEG
Sbjct:    1 MSTAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL-PVIAGHEAAGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 2
Query:   74 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            I  +AAVA+ PN+PL I ++ V  P+ GEV I+   T +CHTDA+T SG DPEG+FP +LGHE AG+V +VGEG
Sbjct:   10 IKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEG 83          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VI CKA V W+P  PL IE+++VAPP+A EVRIK++ T +C TD      ++     P I+GHE  GIVESVGEG
Sbjct:    1 MGTQGKVIRCKATVLWKPGAPLAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFCPMIMGHEGVGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.749e-18
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV W+P  PL +E++ VAPP+  EVR+K++   +C TD  +   K      P I+GHE  GIVESVGEG
Sbjct:    1 MSTAGKVIRCKAAVLWKPGAPLTMEEIDVAPPKGKEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.896e-18
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 2
Query:   74 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            I CKAAV+ +  +PLV+E++ VAPPQ  EVRI+I+ TALCH+D   W  + P   FP ILGHEA G+VESVGE
Sbjct:   17 IRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGE 89          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.091e-17
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   62 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTD-AYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            EG+ I CKAAV+ +P + LVIE++ V PPQA EVRIKI+ T+LCHTD +++     P   FP ILGHEA G++ES+GE
Sbjct:   11 EGKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARFPRILGHEAVGVIESIGE 88          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.430e-17
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA E  KPL + +V +  P+AGEV ++I  T +CHTD +T SG DPEGLFP ILGHE AG+V  VG G
Sbjct:    4 RAAVALEAGKPLEVMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGLFPSILGHEGAGVVVEVGPG 74          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.173e-17
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA E  KPL I +V +  P+AGEV ++I  T +CHTD +T SG DPEG+FP ILGHE AG+V  VG G
Sbjct:    4 RAAVAVEAGKPLEIMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGMFPAILGHEGAGVVVEVGPG 74          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADH7_RAT7.553e-1958.75Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH1S_HORSE7.553e-1959.26Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
FRMA_HAEIN1.288e-1856.76S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH6_RAT1.288e-1853.09Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH6_PERMA3.749e-1851.85Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADHL7_ARATH4.896e-1858.90Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADHL5_ARATH1.091e-1756.41Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
FADH_PARDE2.430e-1757.75S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHI_RHOS43.173e-1757.75Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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