CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.518e-27
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 2
Query:   71 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            VI CKAAVAWE  KPL IE+++VAPP+A EVR+KI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEG
Sbjct:    4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRVKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEG 78          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.983e-27
Identity = 59/80 (73.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            ST G+ ITCKAAVAWE  KPL IEDV VAPP+  EVRIK+  T +CHTDAYT SG DPEG FP ILGHE AGIVES+GEG
Sbjct:    4 STVGKPITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEG 83          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.983e-27
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI CKAAVAWE  KPLVIE+V+VAPPQ  EVR+KILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEG
Sbjct:    4 NTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEG 83          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.383e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEG
Sbjct:    3 TTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.418e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEG
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.418e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEG
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.418e-27
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEG
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.418e-27
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GI+ESVGEG
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.770e-27
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M+T G+VI C+AAV WE  KPL IE+V+VAPPQA EVRIKIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEG
Sbjct:    1 MATAGKVIKCRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.770e-27
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M+T G+VI CKAAVAWE  KPL +E+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GIVESVGEG
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQIPMFPRIFGHEAGGIVESVGEG 81          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADHX_UROHA1.518e-2776.00Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
FADH_CANMA1.983e-2773.75S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH1_PETHY1.983e-2772.50Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]
ADH2_SOLTU3.383e-2771.25Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH3_SOLTU4.418e-2771.25Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLLC4.418e-2771.25Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_SOLTU4.418e-2771.25Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH1_MAIZE4.418e-2769.14Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH2_MAIZE5.770e-2770.37Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_HORVU5.770e-2769.14Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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