CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.842e-27
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 2
Query:   59 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVG 289
            T G++I CKAAVAW+P  PL IE+VQV PP+  EVRIKI+ + +CHTDAYT SGKDPEGLFP ILGHE AGIVESVG
Sbjct:    6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.842e-27
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 2
Query:   65 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            G+ I C AA+AWE  KPL IE+V+VAPP++GEVRIKIL + +CHTDAYT  G DPEG+FP ILGHE AGIVES+GEG
Sbjct:    5 GKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIFPVILGHEGAGIVESIGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.842e-27
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KIL+T+LCHTD Y W  K    +FP I GHEA GI+ESVGEG
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.166e-25
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M+T G+VI CKAAVAWE  KPL +E+V+ APPQA EVR KIL+TALCHTD Y W       +FP ILGHEA GIVESVGEG
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSMEEVEDAPPQAMEVRDKILYTALCHTDVYFWEANGQTPVFPRILGHEAGGIVESVGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.203e-24
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            +T G+ I C AAVA++  KPL +E++ V  P+A EVRIKI +TA+CHTDAYT SG DPEGLFPC+LGHE AGIVESVG+
Sbjct:    4 ATVGKPIKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGD 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.203e-24
Identity = 54/82 (65.85%), Postives = 66/82 (80.49%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VITCKAAVAW   +PLV+EDV+V PPQ  EVRI+ILFT++CHTD   W G+ + +  +P ILGHEAAGIVESVGEG
Sbjct:    1 METQGKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG 82          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   59 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPEGLFPCILGHEAAGIVESVGEG 295
            T+G+VITCKAAV W P  PLVI+++ V PPQ  EVR+KIL++++CHTD   W+G  + E  FP ILGHEA GIVESVGEG
Sbjct:    4 TQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEG 83          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 1.126e-22
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVRI+I+ T+LCHTDA     K     FP I+GHEAAGIVES+G G
Sbjct:    1 MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.276e-22
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVR++I+  ++C +D Y  +    EGL P ILGHE AGIVESVG G
Sbjct:    1 MSTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.589e-22
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +G FP +LGHE AGIVESVG G
Sbjct:    1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGIVESVGPG 80          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FADH2_SCHPO9.842e-2772.73Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_OCTVU9.842e-2770.13Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADH1_PENAM9.842e-2767.90Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADH2_HORVU3.166e-2567.90Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
FADH_YEAST1.203e-2465.82S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHL4_ARATH1.203e-2465.85Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADHL3_ARATH1.126e-2262.50Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH4_HUMAN1.126e-2262.96Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADHQ_RABIT3.276e-2260.49Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH1_GADCA5.589e-2262.96Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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