CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPL-PAILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VITCKAA+AW+ + PL IE+++V+PP+A EVRIK++ T +C TD    + K  + LFP +LGHE AGIVESVG G
Sbjct:    1 MGTQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPK-KKALFPVVLGHECAGIVESVGPG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PAILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA+ P  PL I ++ VAPP+ GEV +KI  T +CHTDAYT SG DPEGLFP +LGHE AG+V  VGEG
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEG 74          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WEP+KP  IED++VAPP+A EVRIK++ T +C +D +  S +      P +LGHE AGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVS-RSLASPLPAVLGHEGAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            ST G+VI CKAAV WEP KP  I +++VAPP+A EVRIKIL + +C +D +  SG      FP ILGHEAAG+VESVGEG
Sbjct:    1 STAGKVIKCKAAVVWEPKKPFSIVEIEVAPPKAHEVRIKILASGICRSDDHVLSGALKVN-FPIILGHEAAGVVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PVILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV W+ NKP  IE+V+VAPP+A EVRIK++ T +C +D +  +G     L P ILGHEAAGIVES+GEG
Sbjct:    1 MSTAGKVIKCKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPL-PVILGHEAAGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE +KP  IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTPL-PAVLGHEGAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI C+AAV WE NKP  IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEG
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEG 80          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADH1B_PAPHA1.377e-2064.20Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH4_RAT1.798e-2056.79Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1B_PANTR1.798e-2064.20Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
FRMA_PASPI2.348e-2063.38S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH1_PERMA2.348e-2059.26Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1B_UROHA2.348e-2061.25Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH1B_HUMAN2.348e-2064.20Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1_RABIT5.231e-2060.49Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1_MOUSE5.231e-2060.49Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1_GEOBU5.231e-2060.49Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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