CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI C+AAV WE NKP  IE+V+VAPP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEG
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   59 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            T G+VI CKAA+AWE  KPL IE ++VAPP+A EVRIKIL T +C +D +  SG     L P +LGHEAAG+VESVGEG
Sbjct:    2 TAGKVIKCKAAIAWEIKKPLSIEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPL-PMVLGHEAAGVVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.832e-20
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEVMKPFSIEDVEVAPPKAYEVRIKMVTVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.923e-20
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 2
Query:   50 AMSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLFPCILGHEAAGIVESVGE 292
            A  TEG+ I CKAA+  +  +PLVIE++QV PPQA EVRIKIL T+LCHTD   W     P   FP ILGHEA G+VES+GE
Sbjct:    4 ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLARFPRILGHEAVGVVESIGE 85          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.923e-20
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            MST G+VI CKAAV WE NKP  +E+V+VAPP+A EVRIKI+ T +C +D +  +G      FP ILGHEAAG++ESVGE
Sbjct:    1 MSTVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPIILGHEAAGVIESVGE 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.923e-20
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPL-PAILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPL-PVILGHEAAGIVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.522e-19
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVR++I    LC +D +  + K      P ILGHE AGIVESVG G
Sbjct:    1 MGTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPKFEGAFLPVILGHEGAGIVESVGPG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.522e-19
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI C+AAV WE NKP  IE+V+V PP+A EVRIKI+ T +C +D +  +G     L P ILGHEA GIVES+GEG
Sbjct:    1 MSTAGKVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPL-PAILGHEAGGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.522e-19
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEG 80          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADH1_GEOAT5.231e-2060.49Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1A_UROHA5.231e-2062.03Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADH1A_MACMU6.832e-2064.20Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
ADHL2_ARATH8.923e-2059.76Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH1_CHICK8.923e-2060.00Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1A_PONAB8.923e-2062.96Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1A_HUMAN1.165e-1962.96Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADHP_RABIT1.522e-1956.79Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH1_GEOKN1.522e-1959.26Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1G_HUMAN1.522e-1961.73Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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