CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 292
            ST G+VI CKAAV WE NKP  +E+V+VAPP+A EVRIKI+ T +C +D +  +G      FP ILGHEAAG+VESVGE
Sbjct:    1 STAGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPVILGHEAAGVVESVGE 78          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++ T +C +D +  SG     L P I GHEAAGIVES+GEG
Sbjct:    1 MSTAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   68 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            QVITC AAVAW   +PLV+E+V+V+PPQ  E+RIK++ T+LC +D   W   + + L P I GHEAAGIVES+GEG
Sbjct:   12 QVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAW---ESQSLLPRIFGHEAAGIVESIGEG 84          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.428e-19
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T G+VI CKAAV W  N+P  IE+++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA G+VESVGEG
Sbjct:    1 MGTAGKVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKG-SMVSKFPVIVGHEAVGVVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.428e-19
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVE VGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPL-PAILGHEAAGIVEGVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWS-GKDPEGLFPCILGHEAAGIVESVGE 292
            S EG+ ITCKAA+  +  + LVIED+ V PPQA EVRIKIL T+LCHTD   W     P   FP ILGHEA G+VES+GE
Sbjct:    8 SNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRFPRILGHEAVGVVESIGE 87          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P   FP ILGHEA G+VES+G G
Sbjct:    1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      FP I+GHEA GIVES+GEG
Sbjct:    1 MGTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKG-TMVSKFPVIVGHEATGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD      K  + LFP +LGHE AGIVESVG G
Sbjct:    1 MGTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            ST G+VI CKAA+ WE  KP  IE+++VAPP+A EVRIKIL T +C +D +  +G     L P ILGHEAAG+VES GEG
Sbjct:    1 STAGKVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPL-PMILGHEAAGVVESTGEG 79          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADH1_COTJA1.988e-1960.76Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1E_HORSE1.988e-1960.49Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADHL6_ARATH3.391e-1957.89Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH7_MOUSE4.428e-1956.79Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1G_PAPHA4.428e-1960.49Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADHL1_ARATH5.783e-1960.00Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH8_RANPE5.783e-1958.02NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH7_HUMAN5.783e-1956.79Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH4_MOUSE5.783e-1954.32Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_ALLMI5.783e-1958.75Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
back to top