CF503807

Overview
NameCF503807
Unique NameCF503807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5604 contig Csv1_Contig5604:7..287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_HORVU (Defender against cell death 1 OS=Hordeum vulgare GN=DAD1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 61/81 (75.31%), Postives = 67/81 (82.72%), Query Frame = 1
Query:   40 RPAKTPQALFHSLRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            + A   + L  SL  AYAATPT LKIIDLYV FAV T+++QVVYM IVGSFPFNSFLSGVLSC+GTAVLAVC RIQVNKDN
Sbjct:    3 KAAGDAKLLIQSLNKAYAATPTNLKIIDLYVVFAVVTALLQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCHRIQVNKDN 83          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD2_HORVU (Defender against cell death 2 OS=Hordeum vulgare GN=DAD2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.144e-26
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   40 RPAKTPQALFHSLRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            + A   + L  SL  AYAATPT LKIIDLYV FAV T+++QVVYM IVGSFPFNSFLSGVLS +GTAVL VCLRIQVNKDN
Sbjct:    3 KAAGDAKLLIQSLNKAYAATPTNLKIIDLYVVFAVATALVQVVYMGIVGSFPFNSFLSGVLSSIGTAVLGVCLRIQVNKDN 83          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_MAIZE (Defender against cell death 1 (Fragment) OS=Zea mays GN=DAD1 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.294e-17
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1
Query:  139 AVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            AV T++IQV YM +VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDN
Sbjct:    1 AVATALIQVAYMGLVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDN 48          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_BOVIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.955e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    +ATP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSATPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_DROME (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Drosophila melanogaster GN=CG13393 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.471e-15
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   97 TPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            TP  LK++D+Y+G+ + T +IQ VY  +VG+FPFNSFLSG +S V   VLAVCLR+Q N  N
Sbjct:   19 TPKKLKLVDIYLGYILLTGIIQFVYCCLVGTFPFNSFLSGFISTVSCFVLAVCLRLQANPQN 80          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_PIG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_MESAU (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
BLAST of CF503807 vs. ExPASy Swiss-Prot
Match: DAD1_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Homo sapiens GN=DAD1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 LRSAYAATPTTLKIIDLYVGFAVFTSVIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 282
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  N
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQN 81          
The following BLAST results are available for this feature:
BLAST of CF503807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DAD1_HORVU3.308e-2775.31Defender against cell death 1 OS=Hordeum vulgare G... [more]
DAD2_HORVU2.144e-2674.07Defender against cell death 2 OS=Hordeum vulgare G... [more]
DAD1_MAIZE5.294e-1785.42Defender against cell death 1 (Fragment) OS=Zea ma... [more]
DAD1_BOVIN4.955e-1552.17Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DROME6.471e-1556.45Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_RAT1.104e-1450.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PIG1.104e-1450.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MOUSE1.104e-1450.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MESAU1.104e-1450.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_HUMAN1.104e-1450.72Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-293 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503807 ID=CF503807; Name=CF503807; organism=Citrus sinensis; type=EST; length=282bp
CAGAGAGAAAGACAGATTACAGAGAGGAAATGGCGAGATCGACCGGCAAA
GACGCCTCAAGCCCTTTTCCATTCCCTTCGCTCTGCTTATGCTGCCACTC
CCACGACTCTTAAGATCATCGATCTGTATGTGGGTTTCGCGGTTTTTACT
TCCGTAATTCAGGTAGTTTACATGGCTATTGTTGGATCCTTCCCATTCAA
CTCTTTTCTTTCAGGAGTACTTTCTTGTGTTGGGACGGCAGTCCTTGCTG
TTTGTCTACGTATTCAAGTGAACAAGGACAAC
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