CF503812

Overview
NameCF503812
Unique NameCF503812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7698 contig Csv1_Contig7698:69..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR_CANAL (Ornithine decarboxylase OS=Candida albicans GN=SPE1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.398e-25
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  127 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGV--SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDS 504
            DE  F++ DLG +++  N     LPM+ P+YAVKCN            G NFDC S++EI+ VL LG+  + +RIIYANPCK  S I++AA   VNLTTVD+V EL K+  +HP   +LIR+ + D +
Sbjct:   73 DEDSFFVCDLGEIINSVNQWQQILPMVQPYYAVKCNSNPQILTTLSELGVNFDCASKNEIDLVLSLGIHQAHERIIYANPCKTNSFIRHAADENVNLTTVDNVHELYKLAKFHPHCKILIRLITDDST 200          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.384e-25
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  136 PFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDS 504
            PF++ DLG +V  +      LP + P YAVKCN            G+ FDC S +EI+ V  +GV P++IIYANPCK +SHI+YA   GV++ T D V+EL+K+   HPK+ +++RI S DDS
Sbjct:   37 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-STDDS 158          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR1_XENLA (Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-A PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.067e-25
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  127 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 510
            D+  FY+ D G +V  +      LP + P YAVKCN            G+ FDC S++EI+ V  +GVSP+RIIYANPCK VS IKYAAS GV   T DS  EL K+   HP + L++RI + DDS A
Sbjct:   36 DKDAFYVADFGDIVKKHVRWFKALPRVTPFYAVKCNDGKAIVKTLSILGAGFDCASKTEIQLVQSIGVSPERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRI-ATDDSKA 162          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR_CHICK (Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.937e-25
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  127 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 510
            D+  FY+ DLG +V  +      LP + P YAVKCN            G+ FDC S++EI+ V  +GV P+RIIYANPCK +S IK+AA+ GV + T DS  EL KI   HPK+ LL+RI + DDS A
Sbjct:   26 DKDAFYVADLGDIVKKHMRWHKALPRVTPFYAVKCNDSEAVVKTLAVLGAGFDCASKTEIQLVQSIGVPPERIIYANPCKQLSQIKHAANSGVRMMTFDSEVELMKIARPHPKAKLLLRI-TTDDSKA 152          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR_MOUSE (Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.183e-24
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  127 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 510
            D+  FY+ DLG ++  +   +  LP + P YAVKCN            G+ FDC S++EI+ V  LGV  +R+IYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A
Sbjct:   36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKA 162          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR2_XENLA (Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.183e-24
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  118 QEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGA 510
            Q  D   F++ DLG VV  +   +  LP + P YAVKCN            G+ FDC S++EIE V  +GV+P+RIIYANPCK +S IKYAA  GV + T D+  EL K+   HP + +++RI + D   +
Sbjct:   32 QTEDRDAFFVADLGDVVRKHLRFLKALPRVKPFYAVKCNSSKGVVKILAELGAGFDCASKTEIELVQDVGVAPERIIYANPCKQISQIKYAAKNGVQMMTFDNEVELSKVSRSHPNARMVLRIATDDSKSS 162          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR_NEUCR (Ornithine decarboxylase OS=Neurospora crassa GN=spe-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.493e-23
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  127 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDS 504
            DE  F++ DLG V   +     NLP + P YAVKC+            G+ FDC S++EIE VL +GV P RIIYA PCK  S+++Y A  GV   T D+ +EL KI   +P ++L +RI + D S
Sbjct:   81 DEDTFFVADLGEVYRQHLRWKLNLPRVKPFYAVKCHPDERLLQLLAALGTGFDCASKAEIEQVLRMGVDPSRIIYAQPCKTNSYLRYVAQQGVRQMTFDNADELRKIARLYPDAELFLRILTDDSS 206          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: DCOR2_DROME (Ornithine decarboxylase 2 OS=Drosophila melanogaster GN=Odc2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.653e-21
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  196 LPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKS 492
            +P I PHYAVKCN            G+ FDC S++E++ VL LGVSP+RII+A+PC+P SH++YA    V   TVD+  E+ K+R  +P S+L++R KS
Sbjct:   52 MPRIEPHYAVKCNDDPVVVKFLADLGTGFDCASKNELKLVLGLGVSPERIIFAHPCRPASHLRYAKEQQVVNGTVDNEYEIYKLRKHYPDSNLIVRFKS 150          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: AZIN1_MOUSE (Antizyme inhibitor 1 OS=Mus musculus GN=Azin1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.937e-21
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  139 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG 507
            F++ DLG +V  ++   + +  I P Y VKCN            G+ F C S++E+  V  LGVSP+ II+ +PCK VS IKYAA VGVN+ T D+  EL KI   HP + +L+ I + D+ G
Sbjct:   40 FFVGDLGKIVKKHSQWQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNIG 162          
BLAST of CF503812 vs. ExPASy Swiss-Prot
Match: AZIN1_PONAB (Antizyme inhibitor 1 OS=Pongo abelii GN=AZIN1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.354e-20
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  139 FYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSG 507
            F++ DLG +V  ++   + +  I P Y VKCN            G+ F C S++E+  V  LGV P+ IIY +PCK VS IKYAA VGVN+ T D+  EL KI   HP + +L+ I + D+ G
Sbjct:   40 FFVGDLGKIVKKHSQWQNVVAQIKPFYTVKCNSAPAVLEILAALGTGFACSSKNEMALVQELGVPPENIIYISPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIATEDNIG 162          
The following BLAST results are available for this feature:
BLAST of CF503812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCOR_CANAL1.398e-2546.09Ornithine decarboxylase OS=Candida albicans GN=SPE... [more]
DCOR_TRYBB2.384e-2545.53Ornithine decarboxylase OS=Trypanosoma brucei bruc... [more]
DCOR1_XENLA4.067e-2547.66Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc... [more]
DCOR_CHICK6.937e-2547.66Ornithine decarboxylase (Fragment) OS=Gallus gallu... [more]
DCOR_MOUSE1.183e-2446.88Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE... [more]
DCOR2_XENLA1.183e-2442.75Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc... [more]
DCOR_NEUCR6.493e-2342.86Ornithine decarboxylase OS=Neurospora crassa GN=sp... [more]
DCOR2_DROME4.653e-2147.47Ornithine decarboxylase 2 OS=Drosophila melanogast... [more]
AZIN1_MOUSE7.937e-2141.46Antizyme inhibitor 1 OS=Mus musculus GN=Azin1 PE=1... [more]
AZIN1_PONAB1.354e-2041.46Antizyme inhibitor 1 OS=Pongo abelii GN=AZIN1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-298 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503812 ID=CF503812; Name=CF503812; organism=Citrus sinensis; type=EST; length=511bp
GGAACTCCAAGCACATTATTGCATTTGGATGCACAAGTAATGGGAGGCCA
GAGAGTCACGACGGTGGTAACAAAAGATGAGCTAACTGAATTCATGCAGT
CAACAATCTTGAAGAGACAAGAGTTCGATGAAGTACCCTTTTACCTAATG
GATTTAGGCGTTGTGGTTTCTCTCTACAATCATATGATCTCAAACCTTCC
GATGATTCATCCTCACTATGCCGTCAAGTGCAATCCCGAGCCAGCCCTTC
TCGAGGCACTTGCAGCTCTTGGCTCAAACTTTGACTGTGGAAGCCGATCC
GAGATTGAAGCTGTTTTGTTACTAGGTGTTTCACCGGATCGTATCATTTA
CGCAAACCCGTGTAAGCCTGTATCTCACATCAAGTATGCTGCGAGTGTTG
GCGTCAACTTGACAACCGTTGACTCAGTAGAGGAGCTCGACAAGATTCGG
AACTGGCATCCGAAATCTGATTTATTGATCAGGATCAAATCCCCGGATGA
TAGCGGAGCGA
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