CF503815

Overview
NameCF503815
Unique NameCF503815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig499 contig Csv1_Contig499:1..320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: PHOT_LISIN (Blue-light photoreceptor OS=Listeria innocua GN=lin0792 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   73 PPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKD 318
            P + + PI++ ++GF ++TGY+ +E IG NC FLQG +TDK EV KIR A+ N KS    LL NY+K+GT F N LT+ PI D
Sbjct:   26 PEQKNNPIIFVNTGFENITGYTKEEAIGSNCHFLQGDDTDKEEVAKIRHAI-NEKSTANVLLKNYRKNGTSFMNELTIEPIYD 107          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO1_ORYSJ (Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.454e-16
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   79 KPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ---------GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +PDCPI+Y + GF   TGY ++EV+GRNCRFLQ          P  D   V +IR  + NG  + G LLN++KDG+P  N L +TPI
Sbjct:   67 EPDCPIIYVNCGFEEATGYRAEEVLGRNCRFLQCRGPFAQRRHPLVDAMVVSEIRKCIDNGTEFRGDLLNFRKDGSPLMNKLHLTPI 153          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUSU (Blue-light-activated histidine kinase OS=Brucella suis GN=BRA0588 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUSI (Blue-light-activated histidine kinase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_B0585 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUME (Blue-light-activated histidine kinase OS=Brucella melitensis GN=BMEII0679 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUC2 (Blue-light-activated histidine kinase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_B0589 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUAB (Blue-light-activated histidine kinase OS=Brucella abortus GN=BruAb2_0636 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUA2 (Blue-light-activated histidine kinase OS=Brucella abortus (strain 2308) GN=BAB2_0652 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUA1 (Blue-light-activated histidine kinase OS=Brucella abortus (strain S19) GN=BAbS19_II06090 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LVHK2_ERYLH (Blue-light-activated histidine kinase 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_04860 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            D P++Y +  F  MTGYS   V+GRNCRFLQG +TD   VE++  A+RN +     + NY+ DG  FWN L + P++D
Sbjct:   29 DEPLIYVNRAFEQMTGYSRSSVVGRNCRFLQGEKTDPGAVERLAKAIRNCEEVEETIYNYRADGEGFWNHLLMGPLED 106          
The following BLAST results are available for this feature:
BLAST of CF503815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PHOT_LISIN4.454e-1651.81Blue-light photoreceptor OS=Listeria innocua GN=li... [more]
ADO1_ORYSJ4.454e-1647.13Adagio-like protein 1 OS=Oryza sativa subsp. japon... [more]
LOVHK_BRUSU1.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUSI1.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUME1.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUC21.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUAB1.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUA21.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LOVHK_BRUA11.692e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
LVHK2_ERYLH2.887e-1546.15Blue-light-activated histidine kinase 2 OS=Erythro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-302 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503815 ID=CF503815; Name=CF503815; organism=Citrus sinensis; type=EST; length=320bp
CATTCCCAAGGGTTTCAGAGGAGTTGAAGGCTGCATTGGCAACATTGCAG
CAAACATTTGTTGTGTCTGATGCCACCTAAACCTGACTGCCCTATAATGT
ATGCCAGCAGTGGCTTTTTTAGCATGACTGGTTACTCTTCCAAGGAGGTC
ATTGGAAGGAATTGCCGGTTTCTTCAAGGGCCAGAAACAGACAAGAATGA
GGTGGAGAAAATACGAGATGCGGTGAGGAACGGGAAGAGTTACTGCGGCA
GGCTCTTGAACTACAAAAAAGATGGTACTCCTTTCTGGAATCTACTCACT
GTTACGCCTATCAAGGATGA
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