CF503815

Overview
NameCF503815
Unique NameCF503815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig499 contig Csv1_Contig499:1..320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO3_ORYSJ (Adagio-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0547000 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.135e-11
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ---------GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            D P++Y ++ F + TGY + EV+GRNCRFLQ          P  D   V +IR  +  G  + G LLN++KDG P +N L + P+
Sbjct:   76 DFPVIYVNAAFEAATGYRADEVLGRNCRFLQFRDPRAQRRHPLVDPMVVSEIRRCLNEGIEFQGELLNFRKDGAPLYNRLRLIPM 160          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH4_RAT (Potassium voltage-gated channel subfamily H member 4 OS=Rattus norvegicus GN=Kcnh4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   91 PIMYASSGFFSMTGYSSKEVIGR--NCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            PI+Y S GF  +TGY   EV+ +  +CRFL GPET +  +++++ A+   + +   +  Y+KDG+ FW LL + PIK+
Sbjct:   41 PIVYCSDGFCELTGYGRTEVMQKTCSCRFLYGPETSEPALQRLQKALEGHQEHRAEICFYRKDGSAFWCLLDMMPIKN 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH4_HUMAN (Potassium voltage-gated channel subfamily H member 4 OS=Homo sapiens GN=KCNH4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.936e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   91 PIMYASSGFFSMTGYSSKEVIGR--NCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            PI+Y S GF  +TGY   EV+ +  +CRFL GPET +  ++++  A+   + +   +  Y+KDG+ FW LL + PIK+
Sbjct:   41 PIVYCSDGFCELTGYGRTEVMQKTCSCRFLYGPETSEPALQRLHKALEGHQEHRAEICFYRKDGSAFWCLLDMMPIKN 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH5_RAT (Potassium voltage-gated channel subfamily H member 5 OS=Rattus norvegicus GN=Kcnh5 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.610e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRN--CRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            D P++Y++ GF  ++GY   +V+ ++  C F+ G  TDK  +EK+R    N +S C  +L YKK+ TP W  + + PI++
Sbjct:   37 DWPVVYSNDGFCKLSGYHRADVMQKSSTCSFMYGELTDKKTIEKVRQTFDNYESNCFEVLLYKKNRTPVWFYMQIAPIRN 116          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH5_MOUSE (Potassium voltage-gated channel subfamily H member 5 OS=Mus musculus GN=Kcnh5 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.610e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRN--CRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            D P++Y++ GF  ++GY   +V+ ++  C F+ G  TDK  +EK+R    N +S C  +L YKK+ TP W  + + PI++
Sbjct:   37 DWPVVYSNDGFCKLSGYHRADVMQKSSTCSFMYGELTDKKTIEKVRQTFDNYESNCFEVLLYKKNRTPVWFYMQIAPIRN 116          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH5_HUMAN (Potassium voltage-gated channel subfamily H member 5 OS=Homo sapiens GN=KCNH5 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.610e-11
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRN--CRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            D P++Y++ GF  ++GY   +V+ ++  C F+ G  TDK  +EK+R    N +S C  +L YKK+ TP W  + + PI++
Sbjct:   37 DWPVVYSNDGFCKLSGYHRADVMQKSSTCSFMYGELTDKKTIEKVRQTFDNYESNCFEVLLYKKNRTPVWFYMQIAPIRN 116          
The following BLAST results are available for this feature:
BLAST of CF503815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ADO3_ORYSJ1.135e-1140.00Adagio-like protein 3 OS=Oryza sativa subsp. japon... [more]
KCNH4_RAT1.483e-1139.74Potassium voltage-gated channel subfamily H member... [more]
KCNH4_HUMAN1.936e-1139.74Potassium voltage-gated channel subfamily H member... [more]
KCNH5_RAT9.610e-1136.25Potassium voltage-gated channel subfamily H member... [more]
KCNH5_MOUSE9.610e-1136.25Potassium voltage-gated channel subfamily H member... [more]
KCNH5_HUMAN9.610e-1136.25Potassium voltage-gated channel subfamily H member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-302 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503815 ID=CF503815; Name=CF503815; organism=Citrus sinensis; type=EST; length=320bp
CATTCCCAAGGGTTTCAGAGGAGTTGAAGGCTGCATTGGCAACATTGCAG
CAAACATTTGTTGTGTCTGATGCCACCTAAACCTGACTGCCCTATAATGT
ATGCCAGCAGTGGCTTTTTTAGCATGACTGGTTACTCTTCCAAGGAGGTC
ATTGGAAGGAATTGCCGGTTTCTTCAAGGGCCAGAAACAGACAAGAATGA
GGTGGAGAAAATACGAGATGCGGTGAGGAACGGGAAGAGTTACTGCGGCA
GGCTCTTGAACTACAAAAAAGATGGTACTCCTTTCTGGAATCTACTCACT
GTTACGCCTATCAAGGATGA
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