CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   28 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +++ INGFGRIGR  AR  L R+  ++ELVAVND   T+D  T  ++ KYDS+ G+ K+ ++   DD ++    K +     RNPE +PW E
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVND---TSDPRTNAHLLKYDSMLGKLKNVDI-TADDNSITVNGKTIKCVSDRNPENLPWKE 89
[Close]
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   28 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +++ INGFGRIGR  AR  L R+  ++ELVAVND   T+D  T  ++ KYDS+ G+ K+ ++   DD ++    K +     RNPE +PW E
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVND---TSDPRTNAHLLKYDSMLGKLKNVDI-TADDNSITVNGKTIKCVSDRNPENLPWKE 89
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P2_ANAVT9.923e-1142.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP9.923e-1142.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
back to top